miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29940 5' -59.4 NC_006273.1 + 45489 1.1 0.002275
Target:  5'- aACCACCGUCGCAGCCGACGGCGAUGCc -3'
miRNA:   3'- -UGGUGGCAGCGUCGGCUGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 186745 0.75 0.399286
Target:  5'- gACCGCUG-CGUGcGCCGACGGCGuuucaagguGUGCg -3'
miRNA:   3'- -UGGUGGCaGCGU-CGGCUGCCGC---------UACG- -5'
29940 5' -59.4 NC_006273.1 + 186314 0.74 0.432261
Target:  5'- aACCACCGUUucaGCGGCCGGCgugaGGCcaucGUGCg -3'
miRNA:   3'- -UGGUGGCAG---CGUCGGCUG----CCGc---UACG- -5'
29940 5' -59.4 NC_006273.1 + 99268 0.66 0.887379
Target:  5'- uCCGCCGcUCGCGgucaaaagcgcgaucGCCGcccACGGCGuccucgGCg -3'
miRNA:   3'- uGGUGGC-AGCGU---------------CGGC---UGCCGCua----CG- -5'
29940 5' -59.4 NC_006273.1 + 93311 0.79 0.243119
Target:  5'- aGCCgugguaACCGUCGCcGCUGGCGGCGcUGCc -3'
miRNA:   3'- -UGG------UGGCAGCGuCGGCUGCCGCuACG- -5'
29940 5' -59.4 NC_006273.1 + 1857 0.78 0.260208
Target:  5'- cGCCGCaccccgCGUCGCuGCUGACGGCcGUGCg -3'
miRNA:   3'- -UGGUG------GCAGCGuCGGCUGCCGcUACG- -5'
29940 5' -59.4 NC_006273.1 + 94712 0.78 0.272136
Target:  5'- cCCGCCGUCGUcGCCuGCGGCGuugGCg -3'
miRNA:   3'- uGGUGGCAGCGuCGGcUGCCGCua-CG- -5'
29940 5' -59.4 NC_006273.1 + 72458 0.78 0.2845
Target:  5'- aACgCACCGUCGguGCCGGCGGCc---- -3'
miRNA:   3'- -UG-GUGGCAGCguCGGCUGCCGcuacg -5'
29940 5' -59.4 NC_006273.1 + 201957 0.76 0.338373
Target:  5'- cGCCgggGCUGUCGCGcgccGCCGACgcccgaGGCGGUGCg -3'
miRNA:   3'- -UGG---UGGCAGCGU----CGGCUG------CCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 120015 0.75 0.399286
Target:  5'- gUCACCGUCGCGuCCGACGcGaCGGUGUu -3'
miRNA:   3'- uGGUGGCAGCGUcGGCUGC-C-GCUACG- -5'
29940 5' -59.4 NC_006273.1 + 34386 0.75 0.375635
Target:  5'- cGCCACCGUUGaC-GUgGGCGGCGAUGa -3'
miRNA:   3'- -UGGUGGCAGC-GuCGgCUGCCGCUACg -5'
29940 5' -59.4 NC_006273.1 + 104603 0.76 0.338373
Target:  5'- aACCACCGUCGauuCUGACGGUGAUaGCc -3'
miRNA:   3'- -UGGUGGCAGCgucGGCUGCCGCUA-CG- -5'
29940 5' -59.4 NC_006273.1 + 202560 0.82 0.155585
Target:  5'- gGCCGgCGUgGCGGCCGACGGCagcGUGCu -3'
miRNA:   3'- -UGGUgGCAgCGUCGGCUGCCGc--UACG- -5'
29940 5' -59.4 NC_006273.1 + 203086 0.75 0.375635
Target:  5'- cCCGCUGUCGCGGCggucgCGACGGUGAcgGUc -3'
miRNA:   3'- uGGUGGCAGCGUCG-----GCUGCCGCUa-CG- -5'
29940 5' -59.4 NC_006273.1 + 38083 0.82 0.159377
Target:  5'- aGCCGCCG-CGCGGCCucGGCGGCGG-GCg -3'
miRNA:   3'- -UGGUGGCaGCGUCGG--CUGCCGCUaCG- -5'
29940 5' -59.4 NC_006273.1 + 197137 0.77 0.323544
Target:  5'- cACCGCCGUCGUuGCCGGuccccguuuccucCGGCGccGCg -3'
miRNA:   3'- -UGGUGGCAGCGuCGGCU-------------GCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 213846 0.75 0.391297
Target:  5'- cGCCGCCGUCcucgaaacgccaGCGcCCGcCGGCGAUGUa -3'
miRNA:   3'- -UGGUGGCAG------------CGUcGGCuGCCGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 87492 0.74 0.423868
Target:  5'- gGCCAgCGcagCGUAGCUGGCG-CGAUGCa -3'
miRNA:   3'- -UGGUgGCa--GCGUCGGCUGCcGCUACG- -5'
29940 5' -59.4 NC_006273.1 + 161617 0.79 0.237634
Target:  5'- cACCAUgGUCGCcGCUGGCGGCGccGCu -3'
miRNA:   3'- -UGGUGgCAGCGuCGGCUGCCGCuaCG- -5'
29940 5' -59.4 NC_006273.1 + 147960 0.78 0.266118
Target:  5'- aGCCcCCGUCGCccgaggcggaggAGCCGGCGGCGGcgGUg -3'
miRNA:   3'- -UGGuGGCAGCG------------UCGGCUGCCGCUa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.