miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 91540 0.65 0.992496
Target:  5'- uGAUGAUGGCGGCGCcucaguauuuuccCCGCCGg- -3'
miRNA:   3'- -CUGCUACCGUUGCGacua---------GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 161892 0.66 0.991752
Target:  5'- cGGCGAUGGCAAggUGCUG---CACC-UCa -3'
miRNA:   3'- -CUGCUACCGUU--GCGACuagGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 91099 0.66 0.991752
Target:  5'- aGAuCGGUaGGC-ACGC-GAUCCGCC-UCg -3'
miRNA:   3'- -CU-GCUA-CCGuUGCGaCUAGGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 196169 0.66 0.991752
Target:  5'- cGACGcgGGC-ACGCUGcugCCGCUc-- -3'
miRNA:   3'- -CUGCuaCCGuUGCGACua-GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 210553 0.66 0.991752
Target:  5'- -gUGA-GGUAACGCUGAuggggauuUCC-CCGUCc -3'
miRNA:   3'- cuGCUaCCGUUGCGACU--------AGGuGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 22708 0.66 0.991752
Target:  5'- -uCGGgauUGGCuACgGCUGGUCCGUCAUCg -3'
miRNA:   3'- cuGCU---ACCGuUG-CGACUAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 1276 0.66 0.991752
Target:  5'- cGACGcgGGC-ACGCUGcugCCGCUc-- -3'
miRNA:   3'- -CUGCuaCCGuUGCGACua-GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 211785 0.66 0.99059
Target:  5'- -uCGgcGGCGACGUgaacGAUCCuuCAUCg -3'
miRNA:   3'- cuGCuaCCGUUGCGa---CUAGGugGUAG- -5'
29941 3' -52.9 NC_006273.1 + 58873 0.66 0.99059
Target:  5'- cACGgcGGCAgcacACGCUG-UCgGCCAUa -3'
miRNA:   3'- cUGCuaCCGU----UGCGACuAGgUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 210714 0.66 0.99059
Target:  5'- gGACGAcGGCAGCGCgGGUgCCGgUuUCg -3'
miRNA:   3'- -CUGCUaCCGUUGCGaCUA-GGUgGuAG- -5'
29941 3' -52.9 NC_006273.1 + 4592 0.66 0.989303
Target:  5'- aGCGGUGGUGGCGCUGGgggUgGCgGUa -3'
miRNA:   3'- cUGCUACCGUUGCGACUa--GgUGgUAg -5'
29941 3' -52.9 NC_006273.1 + 192140 0.66 0.989303
Target:  5'- cGCGAugUGGUAGCcCUGGUCaacuuucugCGCCAUCu -3'
miRNA:   3'- cUGCU--ACCGUUGcGACUAG---------GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 188765 0.66 0.987883
Target:  5'- cACGAUaGGCAGCG-UGGUCgGcuCCGUCg -3'
miRNA:   3'- cUGCUA-CCGUUGCgACUAGgU--GGUAG- -5'
29941 3' -52.9 NC_006273.1 + 192672 0.66 0.987883
Target:  5'- gGACc--GGCAcgccaacacgGCGCUGGUCaaCGCCGUCa -3'
miRNA:   3'- -CUGcuaCCGU----------UGCGACUAG--GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 189116 0.66 0.987883
Target:  5'- --gGAUGGCGGCgGCUGAUgCaguACCGUg -3'
miRNA:   3'- cugCUACCGUUG-CGACUAgG---UGGUAg -5'
29941 3' -52.9 NC_006273.1 + 16036 0.66 0.987883
Target:  5'- cACGGUGGUuuCGCUGGgacggCaacgauaGCCAUCu -3'
miRNA:   3'- cUGCUACCGuuGCGACUa----Gg------UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 135326 0.66 0.986321
Target:  5'- cGACGA--GCAGuCGCUauugGAUCuCACCGUCu -3'
miRNA:   3'- -CUGCUacCGUU-GCGA----CUAG-GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 138716 0.66 0.986321
Target:  5'- cGCGGUGuCGAUGCUGAUCaCGuuGUCc -3'
miRNA:   3'- cUGCUACcGUUGCGACUAG-GUggUAG- -5'
29941 3' -52.9 NC_006273.1 + 161958 0.66 0.986321
Target:  5'- -gUGGUGGCgAGCGCgc-UCCggGCCAUCg -3'
miRNA:   3'- cuGCUACCG-UUGCGacuAGG--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 130261 0.66 0.986321
Target:  5'- -cCGGUGGCGuCGgUGGUgCaACCGUCg -3'
miRNA:   3'- cuGCUACCGUuGCgACUAgG-UGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.