Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29941 | 3' | -52.9 | NC_006273.1 | + | 91540 | 0.65 | 0.992496 |
Target: 5'- uGAUGAUGGCGGCGCcucaguauuuuccCCGCCGg- -3' miRNA: 3'- -CUGCUACCGUUGCGacua---------GGUGGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 211785 | 0.66 | 0.99059 |
Target: 5'- -uCGgcGGCGACGUgaacGAUCCuuCAUCg -3' miRNA: 3'- cuGCuaCCGUUGCGa---CUAGGugGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 4592 | 0.66 | 0.989303 |
Target: 5'- aGCGGUGGUGGCGCUGGgggUgGCgGUa -3' miRNA: 3'- cUGCUACCGUUGCGACUa--GgUGgUAg -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 58873 | 0.66 | 0.99059 |
Target: 5'- cACGgcGGCAgcacACGCUG-UCgGCCAUa -3' miRNA: 3'- cUGCuaCCGU----UGCGACuAGgUGGUAg -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 210714 | 0.66 | 0.99059 |
Target: 5'- gGACGAcGGCAGCGCgGGUgCCGgUuUCg -3' miRNA: 3'- -CUGCUaCCGUUGCGaCUA-GGUgGuAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 162387 | 0.66 | 0.986321 |
Target: 5'- uGGCGGUGGCGGCGgCggGAgCgGCgGUCa -3' miRNA: 3'- -CUGCUACCGUUGC-Ga-CUaGgUGgUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 138716 | 0.66 | 0.986321 |
Target: 5'- cGCGGUGuCGAUGCUGAUCaCGuuGUCc -3' miRNA: 3'- cUGCUACcGUUGCGACUAG-GUggUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 188765 | 0.66 | 0.987883 |
Target: 5'- cACGAUaGGCAGCG-UGGUCgGcuCCGUCg -3' miRNA: 3'- cUGCUA-CCGUUGCgACUAGgU--GGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 102325 | 0.66 | 0.986321 |
Target: 5'- aACGGUGauaAGCGCUGG-CCACCAc- -3' miRNA: 3'- cUGCUACcg-UUGCGACUaGGUGGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 161958 | 0.66 | 0.986321 |
Target: 5'- -gUGGUGGCgAGCGCgc-UCCggGCCAUCg -3' miRNA: 3'- cuGCUACCG-UUGCGacuAGG--UGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 189116 | 0.66 | 0.987883 |
Target: 5'- --gGAUGGCGGCgGCUGAUgCaguACCGUg -3' miRNA: 3'- cugCUACCGUUG-CGACUAgG---UGGUAg -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 16036 | 0.66 | 0.987883 |
Target: 5'- cACGGUGGUuuCGCUGGgacggCaacgauaGCCAUCu -3' miRNA: 3'- cUGCUACCGuuGCGACUa----Gg------UGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 192140 | 0.66 | 0.989303 |
Target: 5'- cGCGAugUGGUAGCcCUGGUCaacuuucugCGCCAUCu -3' miRNA: 3'- cUGCU--ACCGUUGcGACUAG---------GUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 130261 | 0.66 | 0.986321 |
Target: 5'- -cCGGUGGCGuCGgUGGUgCaACCGUCg -3' miRNA: 3'- cuGCUACCGUuGCgACUAgG-UGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 196169 | 0.66 | 0.991752 |
Target: 5'- cGACGcgGGC-ACGCUGcugCCGCUc-- -3' miRNA: 3'- -CUGCuaCCGuUGCGACua-GGUGGuag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 161892 | 0.66 | 0.991752 |
Target: 5'- cGGCGAUGGCAAggUGCUG---CACC-UCa -3' miRNA: 3'- -CUGCUACCGUU--GCGACuagGUGGuAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 99465 | 0.66 | 0.986321 |
Target: 5'- gGGCGucUGGCAGCGCauuaCCACCgaGUCg -3' miRNA: 3'- -CUGCu-ACCGUUGCGacuaGGUGG--UAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 129142 | 0.66 | 0.986321 |
Target: 5'- uGACGAcUGGUAGgcaaaccggcgcCGCUGG-CCACCcgCg -3' miRNA: 3'- -CUGCU-ACCGUU------------GCGACUaGGUGGuaG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 192672 | 0.66 | 0.987883 |
Target: 5'- gGACc--GGCAcgccaacacgGCGCUGGUCaaCGCCGUCa -3' miRNA: 3'- -CUGcuaCCGU----------UGCGACUAG--GUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 91099 | 0.66 | 0.991752 |
Target: 5'- aGAuCGGUaGGC-ACGC-GAUCCGCC-UCg -3' miRNA: 3'- -CU-GCUA-CCGuUGCGaCUAGGUGGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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