Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29941 | 3' | -52.9 | NC_006273.1 | + | 43355 | 1.09 | 0.007667 |
Target: 5'- uGACGAUGGCAACGCUGAUCCACCAUCu -3' miRNA: 3'- -CUGCUACCGUUGCGACUAGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 49951 | 0.74 | 0.73606 |
Target: 5'- cGGCGAcgcgagaguuccUGcGCggUGCUGGUCCACCAcgUCg -3' miRNA: 3'- -CUGCU------------AC-CGuuGCGACUAGGUGGU--AG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 192524 | 0.74 | 0.755455 |
Target: 5'- -uCGGUGcGCGagACGCUGGUCacaGCCAUCg -3' miRNA: 3'- cuGCUAC-CGU--UGCGACUAGg--UGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 43912 | 0.74 | 0.764993 |
Target: 5'- --gGgcGGCGGCGCcGAcuUCCACCAUCa -3' miRNA: 3'- cugCuaCCGUUGCGaCU--AGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 22259 | 0.74 | 0.774413 |
Target: 5'- cGGCGA--GCGACGCgGcUCCGCCGUCg -3' miRNA: 3'- -CUGCUacCGUUGCGaCuAGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 166538 | 0.73 | 0.801872 |
Target: 5'- aACGGUGGUcGCGUUGGuuUCCACCGcuUCa -3' miRNA: 3'- cUGCUACCGuUGCGACU--AGGUGGU--AG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 106047 | 0.72 | 0.867739 |
Target: 5'- aGACGGUGGUgugcGAagUGUUGA-CCACCGUCa -3' miRNA: 3'- -CUGCUACCG----UU--GCGACUaGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 126876 | 0.71 | 0.889121 |
Target: 5'- -uCGGUGGCGACGUcc-UCCACCAgcUCg -3' miRNA: 3'- cuGCUACCGUUGCGacuAGGUGGU--AG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 175893 | 0.71 | 0.8958 |
Target: 5'- cGCGAUGgGCAGCugucGCUG-UCCACCuUCa -3' miRNA: 3'- cUGCUAC-CGUUG----CGACuAGGUGGuAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 98357 | 0.7 | 0.919619 |
Target: 5'- aGGCGAaacgcugUGGCAACGCg---CCGCUGUCc -3' miRNA: 3'- -CUGCU-------ACCGUUGCGacuaGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 41518 | 0.7 | 0.920183 |
Target: 5'- uGAgGAUGGCAGCGCcgGcgCCAgCAg- -3' miRNA: 3'- -CUgCUACCGUUGCGa-CuaGGUgGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 35428 | 0.7 | 0.930946 |
Target: 5'- uGACGAUGGCGugGU--AUCCACgcUCg -3' miRNA: 3'- -CUGCUACCGUugCGacUAGGUGguAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 67770 | 0.69 | 0.935968 |
Target: 5'- ---uAUGGCAcguCGCUGAUCCGCagGUCa -3' miRNA: 3'- cugcUACCGUu--GCGACUAGGUGg-UAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 125502 | 0.69 | 0.935968 |
Target: 5'- uGAgGAUcGGUAGCGCU--UCCugCGUCa -3' miRNA: 3'- -CUgCUA-CCGUUGCGAcuAGGugGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 147238 | 0.69 | 0.935968 |
Target: 5'- cGugGAUGGCugcgaGGCGCUGG-CCG-CGUCg -3' miRNA: 3'- -CugCUACCG-----UUGCGACUaGGUgGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 145084 | 0.69 | 0.940751 |
Target: 5'- cGACGccgcuggcGGCGGCGCUGAUcaCCACCu-- -3' miRNA: 3'- -CUGCua------CCGUUGCGACUA--GGUGGuag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 188056 | 0.69 | 0.945297 |
Target: 5'- aGCGccGGCGGCGCgGGucucgucucgUCCACCAUUu -3' miRNA: 3'- cUGCuaCCGUUGCGaCU----------AGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 119062 | 0.69 | 0.949608 |
Target: 5'- cGAUGAUGGCccgcGACGaaGAgaaccCCGCCGUCc -3' miRNA: 3'- -CUGCUACCG----UUGCgaCUa----GGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 164484 | 0.69 | 0.953687 |
Target: 5'- -cCGA-GGCcgGACGCUGAaacccgUCCACCGUa -3' miRNA: 3'- cuGCUaCCG--UUGCGACU------AGGUGGUAg -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 112471 | 0.69 | 0.953687 |
Target: 5'- cGGCG-UGGCAGgaGCU--UCCGCCGUCc -3' miRNA: 3'- -CUGCuACCGUUg-CGAcuAGGUGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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