Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29941 | 3' | -52.9 | NC_006273.1 | + | 207196 | 0.68 | 0.957162 |
Target: 5'- uGGCuAUGGUGGCGCUGGUCUggaacacgacgguGCCGUa -3' miRNA: 3'- -CUGcUACCGUUGCGACUAGG-------------UGGUAg -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 208357 | 0.68 | 0.957537 |
Target: 5'- cGCGGUGGUgcuguugaggauGACGCUGAgcgugCCGuuGUCa -3' miRNA: 3'- cUGCUACCG------------UUGCGACUa----GGUggUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 93234 | 0.68 | 0.961163 |
Target: 5'- aGCGc-GGCGuACGCUGGUCacguCGCCGUCg -3' miRNA: 3'- cUGCuaCCGU-UGCGACUAG----GUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 62126 | 0.68 | 0.964568 |
Target: 5'- -cCGggGGCcagcagcCGCUGGUCCGCCGg- -3' miRNA: 3'- cuGCuaCCGuu-----GCGACUAGGUGGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 17166 | 0.68 | 0.964568 |
Target: 5'- aACGAcGGCcGCGCcaUGccggucGUCCGCCGUCg -3' miRNA: 3'- cUGCUaCCGuUGCG--AC------UAGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 178727 | 0.68 | 0.964568 |
Target: 5'- aGCGGUGGCGgcgGCGgUGAUcacgaCCACgGUCu -3' miRNA: 3'- cUGCUACCGU---UGCgACUA-----GGUGgUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 73424 | 0.68 | 0.967758 |
Target: 5'- cGCGAUGGCccggAGCGCgcucgCCACCAc- -3' miRNA: 3'- cUGCUACCG----UUGCGacua-GGUGGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 130798 | 0.68 | 0.967758 |
Target: 5'- cGACGGUGGUuucGgcgaacggacacGCGCUGucuUCCACCGc- -3' miRNA: 3'- -CUGCUACCG---U------------UGCGACu--AGGUGGUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 34939 | 0.68 | 0.970739 |
Target: 5'- aGCGGUGGagguGGCgGCUGAUCCACgGg- -3' miRNA: 3'- cUGCUACCg---UUG-CGACUAGGUGgUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 192029 | 0.68 | 0.970739 |
Target: 5'- aGAUGGUGGauCAGCGUUG--CCAUCGUCa -3' miRNA: 3'- -CUGCUACC--GUUGCGACuaGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 142223 | 0.68 | 0.970739 |
Target: 5'- cGCGGUGGacgcaAACGCccguUGcGUCCGCCGUUg -3' miRNA: 3'- cUGCUACCg----UUGCG----AC-UAGGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 169853 | 0.68 | 0.974574 |
Target: 5'- gGACGGUGGUAcCGCgGAcgaagaagaggccgCCGCUAUCg -3' miRNA: 3'- -CUGCUACCGUuGCGaCUa-------------GGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 68791 | 0.67 | 0.97585 |
Target: 5'- cGGCGAUGGCGGgGCUGGuugcuuuUCCugGCCc-- -3' miRNA: 3'- -CUGCUACCGUUgCGACU-------AGG--UGGuag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 218218 | 0.67 | 0.978492 |
Target: 5'- gGACGAccGGCAugGCg---CgGCCGUCg -3' miRNA: 3'- -CUGCUa-CCGUugCGacuaGgUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 92658 | 0.67 | 0.978492 |
Target: 5'- uGACGAcaucUGGCGGCGagcguaCACCAUCg -3' miRNA: 3'- -CUGCU----ACCGUUGCgacuagGUGGUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 119858 | 0.67 | 0.980703 |
Target: 5'- gGAUGAUGGCGcGCGCU--UCCAUUcgCg -3' miRNA: 3'- -CUGCUACCGU-UGCGAcuAGGUGGuaG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 216262 | 0.67 | 0.980703 |
Target: 5'- uGCGAaaGCAGCGUUGuccAUCCACgGUCu -3' miRNA: 3'- cUGCUacCGUUGCGAC---UAGGUGgUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 178687 | 0.67 | 0.980703 |
Target: 5'- cGugGGUGGUGgucAUGUUGAUCC-CgGUCg -3' miRNA: 3'- -CugCUACCGU---UGCGACUAGGuGgUAG- -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 161313 | 0.67 | 0.982739 |
Target: 5'- ---uGUGGCGGCGCUG-UCCGCgCAg- -3' miRNA: 3'- cugcUACCGUUGCGACuAGGUG-GUag -5' |
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29941 | 3' | -52.9 | NC_006273.1 | + | 69418 | 0.67 | 0.982739 |
Target: 5'- aGACGAuggccgaccccUGGCAugGCgGcgCCGCUGUa -3' miRNA: 3'- -CUGCU-----------ACCGUugCGaCuaGGUGGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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