miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 135326 0.66 0.986321
Target:  5'- cGACGA--GCAGuCGCUauugGAUCuCACCGUCu -3'
miRNA:   3'- -CUGCUacCGUU-GCGA----CUAG-GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 130261 0.66 0.986321
Target:  5'- -cCGGUGGCGuCGgUGGUgCaACCGUCg -3'
miRNA:   3'- cuGCUACCGUuGCgACUAgG-UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 102325 0.66 0.986321
Target:  5'- aACGGUGauaAGCGCUGG-CCACCAc- -3'
miRNA:   3'- cUGCUACcg-UUGCGACUaGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 161958 0.66 0.986321
Target:  5'- -gUGGUGGCgAGCGCgc-UCCggGCCAUCg -3'
miRNA:   3'- cuGCUACCG-UUGCGacuAGG--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 23279 0.67 0.984609
Target:  5'- cGCGAccuUGGCGAgagacaucgUGUUGGUCUcaGCCAUCa -3'
miRNA:   3'- cUGCU---ACCGUU---------GCGACUAGG--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 135981 0.67 0.984609
Target:  5'- aACGAggaGGCcgaGACGCUGcgcuacGUCUACUAUCg -3'
miRNA:   3'- cUGCUa--CCG---UUGCGAC------UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 188201 0.67 0.984609
Target:  5'- aGACGGUuGCAGCGU---UCCACCAc- -3'
miRNA:   3'- -CUGCUAcCGUUGCGacuAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 116958 0.67 0.984248
Target:  5'- uGACGGgcuacgugcacagUGGCAGCGCUGcggcagcacugcuGUCgACgCGUCg -3'
miRNA:   3'- -CUGCU-------------ACCGUUGCGAC-------------UAGgUG-GUAG- -5'
29941 3' -52.9 NC_006273.1 + 178688 0.67 0.982739
Target:  5'- cGCGGUGGCGGCGgUGGUUC-CgGUa -3'
miRNA:   3'- cUGCUACCGUUGCgACUAGGuGgUAg -5'
29941 3' -52.9 NC_006273.1 + 161313 0.67 0.982739
Target:  5'- ---uGUGGCGGCGCUG-UCCGCgCAg- -3'
miRNA:   3'- cugcUACCGUUGCGACuAGGUG-GUag -5'
29941 3' -52.9 NC_006273.1 + 49523 0.67 0.982739
Target:  5'- cGACGcGUGGCAagACGaggucAUCUACCGUCg -3'
miRNA:   3'- -CUGC-UACCGU--UGCgac--UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 71806 0.67 0.982739
Target:  5'- cGGCGGUGGCGACaacggGGUUUACCAc- -3'
miRNA:   3'- -CUGCUACCGUUGcga--CUAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 162198 0.67 0.982739
Target:  5'- aGGCGGUGGUugcGGCGCcGcgucuaccgccUCCGCCGUCu -3'
miRNA:   3'- -CUGCUACCG---UUGCGaCu----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 69418 0.67 0.982739
Target:  5'- aGACGAuggccgaccccUGGCAugGCgGcgCCGCUGUa -3'
miRNA:   3'- -CUGCU-----------ACCGUugCGaCuaGGUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 216262 0.67 0.980703
Target:  5'- uGCGAaaGCAGCGUUGuccAUCCACgGUCu -3'
miRNA:   3'- cUGCUacCGUUGCGAC---UAGGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 178687 0.67 0.980703
Target:  5'- cGugGGUGGUGgucAUGUUGAUCC-CgGUCg -3'
miRNA:   3'- -CugCUACCGU---UGCGACUAGGuGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 119858 0.67 0.980703
Target:  5'- gGAUGAUGGCGcGCGCU--UCCAUUcgCg -3'
miRNA:   3'- -CUGCUACCGU-UGCGAcuAGGUGGuaG- -5'
29941 3' -52.9 NC_006273.1 + 218218 0.67 0.978492
Target:  5'- gGACGAccGGCAugGCg---CgGCCGUCg -3'
miRNA:   3'- -CUGCUa-CCGUugCGacuaGgUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 92658 0.67 0.978492
Target:  5'- uGACGAcaucUGGCGGCGagcguaCACCAUCg -3'
miRNA:   3'- -CUGCU----ACCGUUGCgacuagGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 68791 0.67 0.97585
Target:  5'- cGGCGAUGGCGGgGCUGGuugcuuuUCCugGCCc-- -3'
miRNA:   3'- -CUGCUACCGUUgCGACU-------AGG--UGGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.