miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 169853 0.68 0.974574
Target:  5'- gGACGGUGGUAcCGCgGAcgaagaagaggccgCCGCUAUCg -3'
miRNA:   3'- -CUGCUACCGUuGCGaCUa-------------GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 34939 0.68 0.970739
Target:  5'- aGCGGUGGagguGGCgGCUGAUCCACgGg- -3'
miRNA:   3'- cUGCUACCg---UUG-CGACUAGGUGgUag -5'
29941 3' -52.9 NC_006273.1 + 192029 0.68 0.970739
Target:  5'- aGAUGGUGGauCAGCGUUG--CCAUCGUCa -3'
miRNA:   3'- -CUGCUACC--GUUGCGACuaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 142223 0.68 0.970739
Target:  5'- cGCGGUGGacgcaAACGCccguUGcGUCCGCCGUUg -3'
miRNA:   3'- cUGCUACCg----UUGCG----AC-UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 130798 0.68 0.967758
Target:  5'- cGACGGUGGUuucGgcgaacggacacGCGCUGucuUCCACCGc- -3'
miRNA:   3'- -CUGCUACCG---U------------UGCGACu--AGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 73424 0.68 0.967758
Target:  5'- cGCGAUGGCccggAGCGCgcucgCCACCAc- -3'
miRNA:   3'- cUGCUACCG----UUGCGacua-GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 62126 0.68 0.964568
Target:  5'- -cCGggGGCcagcagcCGCUGGUCCGCCGg- -3'
miRNA:   3'- cuGCuaCCGuu-----GCGACUAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 178727 0.68 0.964568
Target:  5'- aGCGGUGGCGgcgGCGgUGAUcacgaCCACgGUCu -3'
miRNA:   3'- cUGCUACCGU---UGCgACUA-----GGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 17166 0.68 0.964568
Target:  5'- aACGAcGGCcGCGCcaUGccggucGUCCGCCGUCg -3'
miRNA:   3'- cUGCUaCCGuUGCG--AC------UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 93234 0.68 0.961163
Target:  5'- aGCGc-GGCGuACGCUGGUCacguCGCCGUCg -3'
miRNA:   3'- cUGCuaCCGU-UGCGACUAG----GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 208357 0.68 0.957537
Target:  5'- cGCGGUGGUgcuguugaggauGACGCUGAgcgugCCGuuGUCa -3'
miRNA:   3'- cUGCUACCG------------UUGCGACUa----GGUggUAG- -5'
29941 3' -52.9 NC_006273.1 + 207196 0.68 0.957162
Target:  5'- uGGCuAUGGUGGCGCUGGUCUggaacacgacgguGCCGUa -3'
miRNA:   3'- -CUGcUACCGUUGCGACUAGG-------------UGGUAg -5'
29941 3' -52.9 NC_006273.1 + 112471 0.69 0.953687
Target:  5'- cGGCG-UGGCAGgaGCU--UCCGCCGUCc -3'
miRNA:   3'- -CUGCuACCGUUg-CGAcuAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 164484 0.69 0.953687
Target:  5'- -cCGA-GGCcgGACGCUGAaacccgUCCACCGUa -3'
miRNA:   3'- cuGCUaCCG--UUGCGACU------AGGUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 119062 0.69 0.949608
Target:  5'- cGAUGAUGGCccgcGACGaaGAgaaccCCGCCGUCc -3'
miRNA:   3'- -CUGCUACCG----UUGCgaCUa----GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 188056 0.69 0.945297
Target:  5'- aGCGccGGCGGCGCgGGucucgucucgUCCACCAUUu -3'
miRNA:   3'- cUGCuaCCGUUGCGaCU----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 145084 0.69 0.940751
Target:  5'- cGACGccgcuggcGGCGGCGCUGAUcaCCACCu-- -3'
miRNA:   3'- -CUGCua------CCGUUGCGACUA--GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 147238 0.69 0.935968
Target:  5'- cGugGAUGGCugcgaGGCGCUGG-CCG-CGUCg -3'
miRNA:   3'- -CugCUACCG-----UUGCGACUaGGUgGUAG- -5'
29941 3' -52.9 NC_006273.1 + 67770 0.69 0.935968
Target:  5'- ---uAUGGCAcguCGCUGAUCCGCagGUCa -3'
miRNA:   3'- cugcUACCGUu--GCGACUAGGUGg-UAG- -5'
29941 3' -52.9 NC_006273.1 + 125502 0.69 0.935968
Target:  5'- uGAgGAUcGGUAGCGCU--UCCugCGUCa -3'
miRNA:   3'- -CUgCUA-CCGUUGCGAcuAGGugGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.