miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 1276 0.66 0.991752
Target:  5'- cGACGcgGGC-ACGCUGcugCCGCUc-- -3'
miRNA:   3'- -CUGCuaCCGuUGCGACua-GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 4592 0.66 0.989303
Target:  5'- aGCGGUGGUGGCGCUGGgggUgGCgGUa -3'
miRNA:   3'- cUGCUACCGUUGCGACUa--GgUGgUAg -5'
29941 3' -52.9 NC_006273.1 + 16036 0.66 0.987883
Target:  5'- cACGGUGGUuuCGCUGGgacggCaacgauaGCCAUCu -3'
miRNA:   3'- cUGCUACCGuuGCGACUa----Gg------UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 17166 0.68 0.964568
Target:  5'- aACGAcGGCcGCGCcaUGccggucGUCCGCCGUCg -3'
miRNA:   3'- cUGCUaCCGuUGCG--AC------UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 22259 0.74 0.774413
Target:  5'- cGGCGA--GCGACGCgGcUCCGCCGUCg -3'
miRNA:   3'- -CUGCUacCGUUGCGaCuAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 22708 0.66 0.991752
Target:  5'- -uCGGgauUGGCuACgGCUGGUCCGUCAUCg -3'
miRNA:   3'- cuGCU---ACCGuUG-CGACUAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 23279 0.67 0.984609
Target:  5'- cGCGAccuUGGCGAgagacaucgUGUUGGUCUcaGCCAUCa -3'
miRNA:   3'- cUGCU---ACCGUU---------GCGACUAGG--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 34939 0.68 0.970739
Target:  5'- aGCGGUGGagguGGCgGCUGAUCCACgGg- -3'
miRNA:   3'- cUGCUACCg---UUG-CGACUAGGUGgUag -5'
29941 3' -52.9 NC_006273.1 + 35428 0.7 0.930946
Target:  5'- uGACGAUGGCGugGU--AUCCACgcUCg -3'
miRNA:   3'- -CUGCUACCGUugCGacUAGGUGguAG- -5'
29941 3' -52.9 NC_006273.1 + 41518 0.7 0.920183
Target:  5'- uGAgGAUGGCAGCGCcgGcgCCAgCAg- -3'
miRNA:   3'- -CUgCUACCGUUGCGa-CuaGGUgGUag -5'
29941 3' -52.9 NC_006273.1 + 43355 1.09 0.007667
Target:  5'- uGACGAUGGCAACGCUGAUCCACCAUCu -3'
miRNA:   3'- -CUGCUACCGUUGCGACUAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 43912 0.74 0.764993
Target:  5'- --gGgcGGCGGCGCcGAcuUCCACCAUCa -3'
miRNA:   3'- cugCuaCCGUUGCGaCU--AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 49523 0.67 0.982739
Target:  5'- cGACGcGUGGCAagACGaggucAUCUACCGUCg -3'
miRNA:   3'- -CUGC-UACCGU--UGCgac--UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 49951 0.74 0.73606
Target:  5'- cGGCGAcgcgagaguuccUGcGCggUGCUGGUCCACCAcgUCg -3'
miRNA:   3'- -CUGCU------------AC-CGuuGCGACUAGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 58873 0.66 0.99059
Target:  5'- cACGgcGGCAgcacACGCUG-UCgGCCAUa -3'
miRNA:   3'- cUGCuaCCGU----UGCGACuAGgUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 62126 0.68 0.964568
Target:  5'- -cCGggGGCcagcagcCGCUGGUCCGCCGg- -3'
miRNA:   3'- cuGCuaCCGuu-----GCGACUAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 67770 0.69 0.935968
Target:  5'- ---uAUGGCAcguCGCUGAUCCGCagGUCa -3'
miRNA:   3'- cugcUACCGUu--GCGACUAGGUGg-UAG- -5'
29941 3' -52.9 NC_006273.1 + 68791 0.67 0.97585
Target:  5'- cGGCGAUGGCGGgGCUGGuugcuuuUCCugGCCc-- -3'
miRNA:   3'- -CUGCUACCGUUgCGACU-------AGG--UGGuag -5'
29941 3' -52.9 NC_006273.1 + 69418 0.67 0.982739
Target:  5'- aGACGAuggccgaccccUGGCAugGCgGcgCCGCUGUa -3'
miRNA:   3'- -CUGCU-----------ACCGUugCGaCuaGGUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 71806 0.67 0.982739
Target:  5'- cGGCGGUGGCGACaacggGGUUUACCAc- -3'
miRNA:   3'- -CUGCUACCGUUGcga--CUAGGUGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.