miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 73424 0.68 0.967758
Target:  5'- cGCGAUGGCccggAGCGCgcucgCCACCAc- -3'
miRNA:   3'- cUGCUACCG----UUGCGacua-GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 91099 0.66 0.991752
Target:  5'- aGAuCGGUaGGC-ACGC-GAUCCGCC-UCg -3'
miRNA:   3'- -CU-GCUA-CCGuUGCGaCUAGGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 91540 0.65 0.992496
Target:  5'- uGAUGAUGGCGGCGCcucaguauuuuccCCGCCGg- -3'
miRNA:   3'- -CUGCUACCGUUGCGacua---------GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 92658 0.67 0.978492
Target:  5'- uGACGAcaucUGGCGGCGagcguaCACCAUCg -3'
miRNA:   3'- -CUGCU----ACCGUUGCgacuagGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 93234 0.68 0.961163
Target:  5'- aGCGc-GGCGuACGCUGGUCacguCGCCGUCg -3'
miRNA:   3'- cUGCuaCCGU-UGCGACUAG----GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 98357 0.7 0.919619
Target:  5'- aGGCGAaacgcugUGGCAACGCg---CCGCUGUCc -3'
miRNA:   3'- -CUGCU-------ACCGUUGCGacuaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 99465 0.66 0.986321
Target:  5'- gGGCGucUGGCAGCGCauuaCCACCgaGUCg -3'
miRNA:   3'- -CUGCu-ACCGUUGCGacuaGGUGG--UAG- -5'
29941 3' -52.9 NC_006273.1 + 102325 0.66 0.986321
Target:  5'- aACGGUGauaAGCGCUGG-CCACCAc- -3'
miRNA:   3'- cUGCUACcg-UUGCGACUaGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 106047 0.72 0.867739
Target:  5'- aGACGGUGGUgugcGAagUGUUGA-CCACCGUCa -3'
miRNA:   3'- -CUGCUACCG----UU--GCGACUaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 112471 0.69 0.953687
Target:  5'- cGGCG-UGGCAGgaGCU--UCCGCCGUCc -3'
miRNA:   3'- -CUGCuACCGUUg-CGAcuAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 116958 0.67 0.984248
Target:  5'- uGACGGgcuacgugcacagUGGCAGCGCUGcggcagcacugcuGUCgACgCGUCg -3'
miRNA:   3'- -CUGCU-------------ACCGUUGCGAC-------------UAGgUG-GUAG- -5'
29941 3' -52.9 NC_006273.1 + 119062 0.69 0.949608
Target:  5'- cGAUGAUGGCccgcGACGaaGAgaaccCCGCCGUCc -3'
miRNA:   3'- -CUGCUACCG----UUGCgaCUa----GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 119858 0.67 0.980703
Target:  5'- gGAUGAUGGCGcGCGCU--UCCAUUcgCg -3'
miRNA:   3'- -CUGCUACCGU-UGCGAcuAGGUGGuaG- -5'
29941 3' -52.9 NC_006273.1 + 125502 0.69 0.935968
Target:  5'- uGAgGAUcGGUAGCGCU--UCCugCGUCa -3'
miRNA:   3'- -CUgCUA-CCGUUGCGAcuAGGugGUAG- -5'
29941 3' -52.9 NC_006273.1 + 126876 0.71 0.889121
Target:  5'- -uCGGUGGCGACGUcc-UCCACCAgcUCg -3'
miRNA:   3'- cuGCUACCGUUGCGacuAGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 129142 0.66 0.986321
Target:  5'- uGACGAcUGGUAGgcaaaccggcgcCGCUGG-CCACCcgCg -3'
miRNA:   3'- -CUGCU-ACCGUU------------GCGACUaGGUGGuaG- -5'
29941 3' -52.9 NC_006273.1 + 130261 0.66 0.986321
Target:  5'- -cCGGUGGCGuCGgUGGUgCaACCGUCg -3'
miRNA:   3'- cuGCUACCGUuGCgACUAgG-UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 130798 0.68 0.967758
Target:  5'- cGACGGUGGUuucGgcgaacggacacGCGCUGucuUCCACCGc- -3'
miRNA:   3'- -CUGCUACCG---U------------UGCGACu--AGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 135326 0.66 0.986321
Target:  5'- cGACGA--GCAGuCGCUauugGAUCuCACCGUCu -3'
miRNA:   3'- -CUGCUacCGUU-GCGA----CUAG-GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 135981 0.67 0.984609
Target:  5'- aACGAggaGGCcgaGACGCUGcgcuacGUCUACUAUCg -3'
miRNA:   3'- cUGCUa--CCG---UUGCGAC------UAGGUGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.