miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 138716 0.66 0.986321
Target:  5'- cGCGGUGuCGAUGCUGAUCaCGuuGUCc -3'
miRNA:   3'- cUGCUACcGUUGCGACUAG-GUggUAG- -5'
29941 3' -52.9 NC_006273.1 + 142223 0.68 0.970739
Target:  5'- cGCGGUGGacgcaAACGCccguUGcGUCCGCCGUUg -3'
miRNA:   3'- cUGCUACCg----UUGCG----AC-UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 145084 0.69 0.940751
Target:  5'- cGACGccgcuggcGGCGGCGCUGAUcaCCACCu-- -3'
miRNA:   3'- -CUGCua------CCGUUGCGACUA--GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 147238 0.69 0.935968
Target:  5'- cGugGAUGGCugcgaGGCGCUGG-CCG-CGUCg -3'
miRNA:   3'- -CugCUACCG-----UUGCGACUaGGUgGUAG- -5'
29941 3' -52.9 NC_006273.1 + 161313 0.67 0.982739
Target:  5'- ---uGUGGCGGCGCUG-UCCGCgCAg- -3'
miRNA:   3'- cugcUACCGUUGCGACuAGGUG-GUag -5'
29941 3' -52.9 NC_006273.1 + 161892 0.66 0.991752
Target:  5'- cGGCGAUGGCAAggUGCUG---CACC-UCa -3'
miRNA:   3'- -CUGCUACCGUU--GCGACuagGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 161958 0.66 0.986321
Target:  5'- -gUGGUGGCgAGCGCgc-UCCggGCCAUCg -3'
miRNA:   3'- cuGCUACCG-UUGCGacuAGG--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 162198 0.67 0.982739
Target:  5'- aGGCGGUGGUugcGGCGCcGcgucuaccgccUCCGCCGUCu -3'
miRNA:   3'- -CUGCUACCG---UUGCGaCu----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 162387 0.66 0.986321
Target:  5'- uGGCGGUGGCGGCGgCggGAgCgGCgGUCa -3'
miRNA:   3'- -CUGCUACCGUUGC-Ga-CUaGgUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 164484 0.69 0.953687
Target:  5'- -cCGA-GGCcgGACGCUGAaacccgUCCACCGUa -3'
miRNA:   3'- cuGCUaCCG--UUGCGACU------AGGUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 166538 0.73 0.801872
Target:  5'- aACGGUGGUcGCGUUGGuuUCCACCGcuUCa -3'
miRNA:   3'- cUGCUACCGuUGCGACU--AGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 169853 0.68 0.974574
Target:  5'- gGACGGUGGUAcCGCgGAcgaagaagaggccgCCGCUAUCg -3'
miRNA:   3'- -CUGCUACCGUuGCGaCUa-------------GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 175893 0.71 0.8958
Target:  5'- cGCGAUGgGCAGCugucGCUG-UCCACCuUCa -3'
miRNA:   3'- cUGCUAC-CGUUG----CGACuAGGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 178687 0.67 0.980703
Target:  5'- cGugGGUGGUGgucAUGUUGAUCC-CgGUCg -3'
miRNA:   3'- -CugCUACCGU---UGCGACUAGGuGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 178688 0.67 0.982739
Target:  5'- cGCGGUGGCGGCGgUGGUUC-CgGUa -3'
miRNA:   3'- cUGCUACCGUUGCgACUAGGuGgUAg -5'
29941 3' -52.9 NC_006273.1 + 178727 0.68 0.964568
Target:  5'- aGCGGUGGCGgcgGCGgUGAUcacgaCCACgGUCu -3'
miRNA:   3'- cUGCUACCGU---UGCgACUA-----GGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 188056 0.69 0.945297
Target:  5'- aGCGccGGCGGCGCgGGucucgucucgUCCACCAUUu -3'
miRNA:   3'- cUGCuaCCGUUGCGaCU----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 188201 0.67 0.984609
Target:  5'- aGACGGUuGCAGCGU---UCCACCAc- -3'
miRNA:   3'- -CUGCUAcCGUUGCGacuAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 188765 0.66 0.987883
Target:  5'- cACGAUaGGCAGCG-UGGUCgGcuCCGUCg -3'
miRNA:   3'- cUGCUA-CCGUUGCgACUAGgU--GGUAG- -5'
29941 3' -52.9 NC_006273.1 + 189116 0.66 0.987883
Target:  5'- --gGAUGGCGGCgGCUGAUgCaguACCGUg -3'
miRNA:   3'- cugCUACCGUUG-CGACUAgG---UGGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.