miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 218218 0.67 0.978492
Target:  5'- gGACGAccGGCAugGCg---CgGCCGUCg -3'
miRNA:   3'- -CUGCUa-CCGUugCGacuaGgUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 216262 0.67 0.980703
Target:  5'- uGCGAaaGCAGCGUUGuccAUCCACgGUCu -3'
miRNA:   3'- cUGCUacCGUUGCGAC---UAGGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 211785 0.66 0.99059
Target:  5'- -uCGgcGGCGACGUgaacGAUCCuuCAUCg -3'
miRNA:   3'- cuGCuaCCGUUGCGa---CUAGGugGUAG- -5'
29941 3' -52.9 NC_006273.1 + 210714 0.66 0.99059
Target:  5'- gGACGAcGGCAGCGCgGGUgCCGgUuUCg -3'
miRNA:   3'- -CUGCUaCCGUUGCGaCUA-GGUgGuAG- -5'
29941 3' -52.9 NC_006273.1 + 210553 0.66 0.991752
Target:  5'- -gUGA-GGUAACGCUGAuggggauuUCC-CCGUCc -3'
miRNA:   3'- cuGCUaCCGUUGCGACU--------AGGuGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 208357 0.68 0.957537
Target:  5'- cGCGGUGGUgcuguugaggauGACGCUGAgcgugCCGuuGUCa -3'
miRNA:   3'- cUGCUACCG------------UUGCGACUa----GGUggUAG- -5'
29941 3' -52.9 NC_006273.1 + 207196 0.68 0.957162
Target:  5'- uGGCuAUGGUGGCGCUGGUCUggaacacgacgguGCCGUa -3'
miRNA:   3'- -CUGcUACCGUUGCGACUAGG-------------UGGUAg -5'
29941 3' -52.9 NC_006273.1 + 196169 0.66 0.991752
Target:  5'- cGACGcgGGC-ACGCUGcugCCGCUc-- -3'
miRNA:   3'- -CUGCuaCCGuUGCGACua-GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 192672 0.66 0.987883
Target:  5'- gGACc--GGCAcgccaacacgGCGCUGGUCaaCGCCGUCa -3'
miRNA:   3'- -CUGcuaCCGU----------UGCGACUAG--GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 192524 0.74 0.755455
Target:  5'- -uCGGUGcGCGagACGCUGGUCacaGCCAUCg -3'
miRNA:   3'- cuGCUAC-CGU--UGCGACUAGg--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 192140 0.66 0.989303
Target:  5'- cGCGAugUGGUAGCcCUGGUCaacuuucugCGCCAUCu -3'
miRNA:   3'- cUGCU--ACCGUUGcGACUAG---------GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 192029 0.68 0.970739
Target:  5'- aGAUGGUGGauCAGCGUUG--CCAUCGUCa -3'
miRNA:   3'- -CUGCUACC--GUUGCGACuaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 189116 0.66 0.987883
Target:  5'- --gGAUGGCGGCgGCUGAUgCaguACCGUg -3'
miRNA:   3'- cugCUACCGUUG-CGACUAgG---UGGUAg -5'
29941 3' -52.9 NC_006273.1 + 188765 0.66 0.987883
Target:  5'- cACGAUaGGCAGCG-UGGUCgGcuCCGUCg -3'
miRNA:   3'- cUGCUA-CCGUUGCgACUAGgU--GGUAG- -5'
29941 3' -52.9 NC_006273.1 + 188201 0.67 0.984609
Target:  5'- aGACGGUuGCAGCGU---UCCACCAc- -3'
miRNA:   3'- -CUGCUAcCGUUGCGacuAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 188056 0.69 0.945297
Target:  5'- aGCGccGGCGGCGCgGGucucgucucgUCCACCAUUu -3'
miRNA:   3'- cUGCuaCCGUUGCGaCU----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 178727 0.68 0.964568
Target:  5'- aGCGGUGGCGgcgGCGgUGAUcacgaCCACgGUCu -3'
miRNA:   3'- cUGCUACCGU---UGCgACUA-----GGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 178688 0.67 0.982739
Target:  5'- cGCGGUGGCGGCGgUGGUUC-CgGUa -3'
miRNA:   3'- cUGCUACCGUUGCgACUAGGuGgUAg -5'
29941 3' -52.9 NC_006273.1 + 178687 0.67 0.980703
Target:  5'- cGugGGUGGUGgucAUGUUGAUCC-CgGUCg -3'
miRNA:   3'- -CugCUACCGU---UGCGACUAGGuGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 175893 0.71 0.8958
Target:  5'- cGCGAUGgGCAGCugucGCUG-UCCACCuUCa -3'
miRNA:   3'- cUGCUAC-CGUUG----CGACuAGGUGGuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.