miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 216262 0.67 0.980703
Target:  5'- uGCGAaaGCAGCGUUGuccAUCCACgGUCu -3'
miRNA:   3'- cUGCUacCGUUGCGAC---UAGGUGgUAG- -5'
29941 3' -52.9 NC_006273.1 + 62126 0.68 0.964568
Target:  5'- -cCGggGGCcagcagcCGCUGGUCCGCCGg- -3'
miRNA:   3'- cuGCuaCCGuu-----GCGACUAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 130798 0.68 0.967758
Target:  5'- cGACGGUGGUuucGgcgaacggacacGCGCUGucuUCCACCGc- -3'
miRNA:   3'- -CUGCUACCG---U------------UGCGACu--AGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 73424 0.68 0.967758
Target:  5'- cGCGAUGGCccggAGCGCgcucgCCACCAc- -3'
miRNA:   3'- cUGCUACCG----UUGCGacua-GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 34939 0.68 0.970739
Target:  5'- aGCGGUGGagguGGCgGCUGAUCCACgGg- -3'
miRNA:   3'- cUGCUACCg---UUG-CGACUAGGUGgUag -5'
29941 3' -52.9 NC_006273.1 + 192029 0.68 0.970739
Target:  5'- aGAUGGUGGauCAGCGUUG--CCAUCGUCa -3'
miRNA:   3'- -CUGCUACC--GUUGCGACuaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 142223 0.68 0.970739
Target:  5'- cGCGGUGGacgcaAACGCccguUGcGUCCGCCGUUg -3'
miRNA:   3'- cUGCUACCg----UUGCG----AC-UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 218218 0.67 0.978492
Target:  5'- gGACGAccGGCAugGCg---CgGCCGUCg -3'
miRNA:   3'- -CUGCUa-CCGUugCGacuaGgUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 92658 0.67 0.978492
Target:  5'- uGACGAcaucUGGCGGCGagcguaCACCAUCg -3'
miRNA:   3'- -CUGCU----ACCGUUGCgacuagGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 208357 0.68 0.957537
Target:  5'- cGCGGUGGUgcuguugaggauGACGCUGAgcgugCCGuuGUCa -3'
miRNA:   3'- cUGCUACCG------------UUGCGACUa----GGUggUAG- -5'
29941 3' -52.9 NC_006273.1 + 207196 0.68 0.957162
Target:  5'- uGGCuAUGGUGGCGCUGGUCUggaacacgacgguGCCGUa -3'
miRNA:   3'- -CUGcUACCGUUGCGACUAGG-------------UGGUAg -5'
29941 3' -52.9 NC_006273.1 + 164484 0.69 0.953687
Target:  5'- -cCGA-GGCcgGACGCUGAaacccgUCCACCGUa -3'
miRNA:   3'- cuGCUaCCG--UUGCGACU------AGGUGGUAg -5'
29941 3' -52.9 NC_006273.1 + 166538 0.73 0.801872
Target:  5'- aACGGUGGUcGCGUUGGuuUCCACCGcuUCa -3'
miRNA:   3'- cUGCUACCGuUGCGACU--AGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 106047 0.72 0.867739
Target:  5'- aGACGGUGGUgugcGAagUGUUGA-CCACCGUCa -3'
miRNA:   3'- -CUGCUACCG----UU--GCGACUaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 126876 0.71 0.889121
Target:  5'- -uCGGUGGCGACGUcc-UCCACCAgcUCg -3'
miRNA:   3'- cuGCUACCGUUGCGacuAGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 41518 0.7 0.920183
Target:  5'- uGAgGAUGGCAGCGCcgGcgCCAgCAg- -3'
miRNA:   3'- -CUgCUACCGUUGCGa-CuaGGUgGUag -5'
29941 3' -52.9 NC_006273.1 + 125502 0.69 0.935968
Target:  5'- uGAgGAUcGGUAGCGCU--UCCugCGUCa -3'
miRNA:   3'- -CUgCUA-CCGUUGCGAcuAGGugGUAG- -5'
29941 3' -52.9 NC_006273.1 + 145084 0.69 0.940751
Target:  5'- cGACGccgcuggcGGCGGCGCUGAUcaCCACCu-- -3'
miRNA:   3'- -CUGCua------CCGUUGCGACUA--GGUGGuag -5'
29941 3' -52.9 NC_006273.1 + 188056 0.69 0.945297
Target:  5'- aGCGccGGCGGCGCgGGucucgucucgUCCACCAUUu -3'
miRNA:   3'- cUGCuaCCGUUGCGaCU----------AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 112471 0.69 0.953687
Target:  5'- cGGCG-UGGCAGgaGCU--UCCGCCGUCc -3'
miRNA:   3'- -CUGCuACCGUUg-CGAcuAGGUGGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.