miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 3' -52.9 NC_006273.1 + 43355 1.09 0.007667
Target:  5'- uGACGAUGGCAACGCUGAUCCACCAUCu -3'
miRNA:   3'- -CUGCUACCGUUGCGACUAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 49523 0.67 0.982739
Target:  5'- cGACGcGUGGCAagACGaggucAUCUACCGUCg -3'
miRNA:   3'- -CUGC-UACCGU--UGCgac--UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 102325 0.66 0.986321
Target:  5'- aACGGUGauaAGCGCUGG-CCACCAc- -3'
miRNA:   3'- cUGCUACcg-UUGCGACUaGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 91540 0.65 0.992496
Target:  5'- uGAUGAUGGCGGCGCcucaguauuuuccCCGCCGg- -3'
miRNA:   3'- -CUGCUACCGUUGCGacua---------GGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 175893 0.71 0.8958
Target:  5'- cGCGAUGgGCAGCugucGCUG-UCCACCuUCa -3'
miRNA:   3'- cUGCUAC-CGUUG----CGACuAGGUGGuAG- -5'
29941 3' -52.9 NC_006273.1 + 98357 0.7 0.919619
Target:  5'- aGGCGAaacgcugUGGCAACGCg---CCGCUGUCc -3'
miRNA:   3'- -CUGCU-------ACCGUUGCGacuaGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 67770 0.69 0.935968
Target:  5'- ---uAUGGCAcguCGCUGAUCCGCagGUCa -3'
miRNA:   3'- cugcUACCGUu--GCGACUAGGUGg-UAG- -5'
29941 3' -52.9 NC_006273.1 + 147238 0.69 0.935968
Target:  5'- cGugGAUGGCugcgaGGCGCUGG-CCG-CGUCg -3'
miRNA:   3'- -CugCUACCG-----UUGCGACUaGGUgGUAG- -5'
29941 3' -52.9 NC_006273.1 + 17166 0.68 0.964568
Target:  5'- aACGAcGGCcGCGCcaUGccggucGUCCGCCGUCg -3'
miRNA:   3'- cUGCUaCCGuUGCG--AC------UAGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 178688 0.67 0.982739
Target:  5'- cGCGGUGGCGGCGgUGGUUC-CgGUa -3'
miRNA:   3'- cUGCUACCGUUGCgACUAGGuGgUAg -5'
29941 3' -52.9 NC_006273.1 + 169853 0.68 0.974574
Target:  5'- gGACGGUGGUAcCGCgGAcgaagaagaggccgCCGCUAUCg -3'
miRNA:   3'- -CUGCUACCGUuGCGaCUa-------------GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 93234 0.68 0.961163
Target:  5'- aGCGc-GGCGuACGCUGGUCacguCGCCGUCg -3'
miRNA:   3'- cUGCuaCCGU-UGCGACUAG----GUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 49951 0.74 0.73606
Target:  5'- cGGCGAcgcgagaguuccUGcGCggUGCUGGUCCACCAcgUCg -3'
miRNA:   3'- -CUGCU------------AC-CGuuGCGACUAGGUGGU--AG- -5'
29941 3' -52.9 NC_006273.1 + 68791 0.67 0.97585
Target:  5'- cGGCGAUGGCGGgGCUGGuugcuuuUCCugGCCc-- -3'
miRNA:   3'- -CUGCUACCGUUgCGACU-------AGG--UGGuag -5'
29941 3' -52.9 NC_006273.1 + 192524 0.74 0.755455
Target:  5'- -uCGGUGcGCGagACGCUGGUCacaGCCAUCg -3'
miRNA:   3'- cuGCUAC-CGU--UGCGACUAGg--UGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 119062 0.69 0.949608
Target:  5'- cGAUGAUGGCccgcGACGaaGAgaaccCCGCCGUCc -3'
miRNA:   3'- -CUGCUACCG----UUGCgaCUa----GGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 71806 0.67 0.982739
Target:  5'- cGGCGGUGGCGACaacggGGUUUACCAc- -3'
miRNA:   3'- -CUGCUACCGUUGcga--CUAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 188201 0.67 0.984609
Target:  5'- aGACGGUuGCAGCGU---UCCACCAc- -3'
miRNA:   3'- -CUGCUAcCGUUGCGacuAGGUGGUag -5'
29941 3' -52.9 NC_006273.1 + 43912 0.74 0.764993
Target:  5'- --gGgcGGCGGCGCcGAcuUCCACCAUCa -3'
miRNA:   3'- cugCuaCCGUUGCGaCU--AGGUGGUAG- -5'
29941 3' -52.9 NC_006273.1 + 35428 0.7 0.930946
Target:  5'- uGACGAUGGCGugGU--AUCCACgcUCg -3'
miRNA:   3'- -CUGCUACCGUugCGacUAGGUGguAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.