miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 5' -60 NC_006273.1 + 213102 0.66 0.848781
Target:  5'- aGCuGcUGUUcGGCCACCAGcgcguGGCUGCg- -3'
miRNA:   3'- -CG-CaACAGcCCGGUGGUC-----CCGACGag -5'
29941 5' -60 NC_006273.1 + 155133 0.66 0.848781
Target:  5'- cGCGUUGuuUCGuGGCUaauGCCgAGGGCcGCg- -3'
miRNA:   3'- -CGCAAC--AGC-CCGG---UGG-UCCCGaCGag -5'
29941 5' -60 NC_006273.1 + 61774 0.66 0.841127
Target:  5'- uGCGUUGccgagcUCGGGCUACCAcuuuGGCuucgUGCgUCa -3'
miRNA:   3'- -CGCAAC------AGCCCGGUGGUc---CCG----ACG-AG- -5'
29941 5' -60 NC_006273.1 + 49949 0.66 0.81716
Target:  5'- aGCGU--UCGGGCCaggccacgugcaGCCGGGuGCcgcauuccUGCUCc -3'
miRNA:   3'- -CGCAacAGCCCGG------------UGGUCC-CG--------ACGAG- -5'
29941 5' -60 NC_006273.1 + 210499 0.66 0.808857
Target:  5'- aGCGUuuguuagcUGUCGGGUgAUCAGGGac-CUCc -3'
miRNA:   3'- -CGCA--------ACAGCCCGgUGGUCCCgacGAG- -5'
29941 5' -60 NC_006273.1 + 140641 0.66 0.808857
Target:  5'- aGCGggG-CGGGCCGggaAGGGgaGCUg -3'
miRNA:   3'- -CGCaaCaGCCCGGUgg-UCCCgaCGAg -5'
29941 5' -60 NC_006273.1 + 139806 0.67 0.799557
Target:  5'- cCGUcagGUCuccgGGGuCCGCCGGGGUuucgacgucccugUGCUCg -3'
miRNA:   3'- cGCAa--CAG----CCC-GGUGGUCCCG-------------ACGAG- -5'
29941 5' -60 NC_006273.1 + 36436 0.67 0.791823
Target:  5'- uGCGUguucaGUUGGGCgGCaGGGGCaUGCg- -3'
miRNA:   3'- -CGCAa----CAGCCCGgUGgUCCCG-ACGag -5'
29941 5' -60 NC_006273.1 + 167670 0.67 0.774267
Target:  5'- gGCGggGUC-GGCCGCCguucgucgucacGGGGCgGCg- -3'
miRNA:   3'- -CGCaaCAGcCCGGUGG------------UCCCGaCGag -5'
29941 5' -60 NC_006273.1 + 129964 0.67 0.768908
Target:  5'- cGCGUcccuggggcugcugcUGcaCGGGCUcgACCGGcGGCUGCUg -3'
miRNA:   3'- -CGCA---------------ACa-GCCCGG--UGGUC-CCGACGAg -5'
29941 5' -60 NC_006273.1 + 179330 0.67 0.765313
Target:  5'- cGCcgUGUCcGGCCACgaAGaGGCUGCUUa -3'
miRNA:   3'- -CGcaACAGcCCGGUGg-UC-CCGACGAG- -5'
29941 5' -60 NC_006273.1 + 54977 0.67 0.765313
Target:  5'- cCGUcGUCGGGCaCAgacCCAuGGCcUGCUCg -3'
miRNA:   3'- cGCAaCAGCCCG-GU---GGUcCCG-ACGAG- -5'
29941 5' -60 NC_006273.1 + 205352 0.67 0.765313
Target:  5'- cCGUgGUCuGGCCGCCGGGcuggaaccuaguGCUGCa- -3'
miRNA:   3'- cGCAaCAGcCCGGUGGUCC------------CGACGag -5'
29941 5' -60 NC_006273.1 + 82387 0.68 0.737838
Target:  5'- aCG-UGUCGcGGCCagagcaugcACCAGGuGCUGCg- -3'
miRNA:   3'- cGCaACAGC-CCGG---------UGGUCC-CGACGag -5'
29941 5' -60 NC_006273.1 + 83358 0.68 0.724746
Target:  5'- gGCGccgUGgugggaggacccgCGGGCCACgucGGGCUGCUg -3'
miRNA:   3'- -CGCa--ACa------------GCCCGGUGgu-CCCGACGAg -5'
29941 5' -60 NC_006273.1 + 121608 0.69 0.690484
Target:  5'- aUGUaGUC-GGCCA-CGGGGUUGCUCu -3'
miRNA:   3'- cGCAaCAGcCCGGUgGUCCCGACGAG- -5'
29941 5' -60 NC_006273.1 + 183699 0.69 0.68085
Target:  5'- uCGUUGgcccacaucCaGGCCACCGGGGCUcagccuucucacGCUCc -3'
miRNA:   3'- cGCAACa--------GcCCGGUGGUCCCGA------------CGAG- -5'
29941 5' -60 NC_006273.1 + 198090 0.69 0.66148
Target:  5'- cCGgcaUGUCcGGCCGUCgcaAGGGCUGCUCg -3'
miRNA:   3'- cGCa--ACAGcCCGGUGG---UCCCGACGAG- -5'
29941 5' -60 NC_006273.1 + 120736 0.69 0.65176
Target:  5'- -gGUUG-CGGGCCaggaugccggccGCCAGGGCgGC-Ca -3'
miRNA:   3'- cgCAACaGCCCGG------------UGGUCCCGaCGaG- -5'
29941 5' -60 NC_006273.1 + 122020 0.69 0.65176
Target:  5'- gGCGUcgaGUCGGGCguguacugcgaCACCaggaucagcgAGGGCUGgCUCa -3'
miRNA:   3'- -CGCAa--CAGCCCG-----------GUGG----------UCCCGAC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.