Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29941 | 5' | -60 | NC_006273.1 | + | 133907 | 0.69 | 0.642025 |
Target: 5'- aGCGccUUGUCGcGGCC-CaugagguagaAGGGCUGUUCg -3' miRNA: 3'- -CGC--AACAGC-CCGGuGg---------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 40486 | 0.7 | 0.583705 |
Target: 5'- gGCGUgGUCGaGGCgGCCc-GGCUGCUg -3' miRNA: 3'- -CGCAaCAGC-CCGgUGGucCCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 46514 | 0.71 | 0.554887 |
Target: 5'- aUGUUGacccaGGGCUGCUccaacuuuguGGGGCUGCUCa -3' miRNA: 3'- cGCAACag---CCCGGUGG----------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 131269 | 0.72 | 0.480496 |
Target: 5'- aGCGUcuUCGGGCaCACCgAGGGCcaggUGCUa -3' miRNA: 3'- -CGCAacAGCCCG-GUGG-UCCCG----ACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 86482 | 0.73 | 0.462645 |
Target: 5'- cGCGUUGUCaGGuCCAgCAGGucCUGCUCc -3' miRNA: 3'- -CGCAACAGcCC-GGUgGUCCc-GACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 87679 | 0.73 | 0.461761 |
Target: 5'- uGCuGUUGUUGcggucugaaaagcGGCCACgGGGGCUGCg- -3' miRNA: 3'- -CG-CAACAGC-------------CCGGUGgUCCCGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 43389 | 1.1 | 0.001735 |
Target: 5'- gGCGUUGUCGGGCCACCAGGGCUGCUCc -3' miRNA: 3'- -CGCAACAGCCCGGUGGUCCCGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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