Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29941 | 5' | -60 | NC_006273.1 | + | 36436 | 0.67 | 0.791823 |
Target: 5'- uGCGUguucaGUUGGGCgGCaGGGGCaUGCg- -3' miRNA: 3'- -CGCAa----CAGCCCGgUGgUCCCG-ACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 40486 | 0.7 | 0.583705 |
Target: 5'- gGCGUgGUCGaGGCgGCCc-GGCUGCUg -3' miRNA: 3'- -CGCAaCAGC-CCGgUGGucCCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 43389 | 1.1 | 0.001735 |
Target: 5'- gGCGUUGUCGGGCCACCAGGGCUGCUCc -3' miRNA: 3'- -CGCAACAGCCCGGUGGUCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 46514 | 0.71 | 0.554887 |
Target: 5'- aUGUUGacccaGGGCUGCUccaacuuuguGGGGCUGCUCa -3' miRNA: 3'- cGCAACag---CCCGGUGG----------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 49949 | 0.66 | 0.81716 |
Target: 5'- aGCGU--UCGGGCCaggccacgugcaGCCGGGuGCcgcauuccUGCUCc -3' miRNA: 3'- -CGCAacAGCCCGG------------UGGUCC-CG--------ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 54977 | 0.67 | 0.765313 |
Target: 5'- cCGUcGUCGGGCaCAgacCCAuGGCcUGCUCg -3' miRNA: 3'- cGCAaCAGCCCG-GU---GGUcCCG-ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 61774 | 0.66 | 0.841127 |
Target: 5'- uGCGUUGccgagcUCGGGCUACCAcuuuGGCuucgUGCgUCa -3' miRNA: 3'- -CGCAAC------AGCCCGGUGGUc---CCG----ACG-AG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 82387 | 0.68 | 0.737838 |
Target: 5'- aCG-UGUCGcGGCCagagcaugcACCAGGuGCUGCg- -3' miRNA: 3'- cGCaACAGC-CCGG---------UGGUCC-CGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 83358 | 0.68 | 0.724746 |
Target: 5'- gGCGccgUGgugggaggacccgCGGGCCACgucGGGCUGCUg -3' miRNA: 3'- -CGCa--ACa------------GCCCGGUGgu-CCCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 86482 | 0.73 | 0.462645 |
Target: 5'- cGCGUUGUCaGGuCCAgCAGGucCUGCUCc -3' miRNA: 3'- -CGCAACAGcCC-GGUgGUCCc-GACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 87679 | 0.73 | 0.461761 |
Target: 5'- uGCuGUUGUUGcggucugaaaagcGGCCACgGGGGCUGCg- -3' miRNA: 3'- -CG-CAACAGC-------------CCGGUGgUCCCGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 120736 | 0.69 | 0.65176 |
Target: 5'- -gGUUG-CGGGCCaggaugccggccGCCAGGGCgGC-Ca -3' miRNA: 3'- cgCAACaGCCCGG------------UGGUCCCGaCGaG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 121608 | 0.69 | 0.690484 |
Target: 5'- aUGUaGUC-GGCCA-CGGGGUUGCUCu -3' miRNA: 3'- cGCAaCAGcCCGGUgGUCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 122020 | 0.69 | 0.65176 |
Target: 5'- gGCGUcgaGUCGGGCguguacugcgaCACCaggaucagcgAGGGCUGgCUCa -3' miRNA: 3'- -CGCAa--CAGCCCG-----------GUGG----------UCCCGAC-GAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 129964 | 0.67 | 0.768908 |
Target: 5'- cGCGUcccuggggcugcugcUGcaCGGGCUcgACCGGcGGCUGCUg -3' miRNA: 3'- -CGCA---------------ACa-GCCCGG--UGGUC-CCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 131269 | 0.72 | 0.480496 |
Target: 5'- aGCGUcuUCGGGCaCACCgAGGGCcaggUGCUa -3' miRNA: 3'- -CGCAacAGCCCG-GUGG-UCCCG----ACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 133907 | 0.69 | 0.642025 |
Target: 5'- aGCGccUUGUCGcGGCC-CaugagguagaAGGGCUGUUCg -3' miRNA: 3'- -CGC--AACAGC-CCGGuGg---------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 139806 | 0.67 | 0.799557 |
Target: 5'- cCGUcagGUCuccgGGGuCCGCCGGGGUuucgacgucccugUGCUCg -3' miRNA: 3'- cGCAa--CAG----CCC-GGUGGUCCCG-------------ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 140641 | 0.66 | 0.808857 |
Target: 5'- aGCGggG-CGGGCCGggaAGGGgaGCUg -3' miRNA: 3'- -CGCaaCaGCCCGGUgg-UCCCgaCGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 155133 | 0.66 | 0.848781 |
Target: 5'- cGCGUUGuuUCGuGGCUaauGCCgAGGGCcGCg- -3' miRNA: 3'- -CGCAAC--AGC-CCGG---UGG-UCCCGaCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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