Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29941 | 5' | -60 | NC_006273.1 | + | 167670 | 0.67 | 0.774267 |
Target: 5'- gGCGggGUC-GGCCGCCguucgucgucacGGGGCgGCg- -3' miRNA: 3'- -CGCaaCAGcCCGGUGG------------UCCCGaCGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 179330 | 0.67 | 0.765313 |
Target: 5'- cGCcgUGUCcGGCCACgaAGaGGCUGCUUa -3' miRNA: 3'- -CGcaACAGcCCGGUGg-UC-CCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 183699 | 0.69 | 0.68085 |
Target: 5'- uCGUUGgcccacaucCaGGCCACCGGGGCUcagccuucucacGCUCc -3' miRNA: 3'- cGCAACa--------GcCCGGUGGUCCCGA------------CGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 198090 | 0.69 | 0.66148 |
Target: 5'- cCGgcaUGUCcGGCCGUCgcaAGGGCUGCUCg -3' miRNA: 3'- cGCa--ACAGcCCGGUGG---UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 205352 | 0.67 | 0.765313 |
Target: 5'- cCGUgGUCuGGCCGCCGGGcuggaaccuaguGCUGCa- -3' miRNA: 3'- cGCAaCAGcCCGGUGGUCC------------CGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 210499 | 0.66 | 0.808857 |
Target: 5'- aGCGUuuguuagcUGUCGGGUgAUCAGGGac-CUCc -3' miRNA: 3'- -CGCA--------ACAGCCCGgUGGUCCCgacGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 213102 | 0.66 | 0.848781 |
Target: 5'- aGCuGcUGUUcGGCCACCAGcgcguGGCUGCg- -3' miRNA: 3'- -CG-CaACAGcCCGGUGGUC-----CCGACGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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