miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29941 5' -60 NC_006273.1 + 167670 0.67 0.774267
Target:  5'- gGCGggGUC-GGCCGCCguucgucgucacGGGGCgGCg- -3'
miRNA:   3'- -CGCaaCAGcCCGGUGG------------UCCCGaCGag -5'
29941 5' -60 NC_006273.1 + 179330 0.67 0.765313
Target:  5'- cGCcgUGUCcGGCCACgaAGaGGCUGCUUa -3'
miRNA:   3'- -CGcaACAGcCCGGUGg-UC-CCGACGAG- -5'
29941 5' -60 NC_006273.1 + 183699 0.69 0.68085
Target:  5'- uCGUUGgcccacaucCaGGCCACCGGGGCUcagccuucucacGCUCc -3'
miRNA:   3'- cGCAACa--------GcCCGGUGGUCCCGA------------CGAG- -5'
29941 5' -60 NC_006273.1 + 198090 0.69 0.66148
Target:  5'- cCGgcaUGUCcGGCCGUCgcaAGGGCUGCUCg -3'
miRNA:   3'- cGCa--ACAGcCCGGUGG---UCCCGACGAG- -5'
29941 5' -60 NC_006273.1 + 205352 0.67 0.765313
Target:  5'- cCGUgGUCuGGCCGCCGGGcuggaaccuaguGCUGCa- -3'
miRNA:   3'- cGCAaCAGcCCGGUGGUCC------------CGACGag -5'
29941 5' -60 NC_006273.1 + 210499 0.66 0.808857
Target:  5'- aGCGUuuguuagcUGUCGGGUgAUCAGGGac-CUCc -3'
miRNA:   3'- -CGCA--------ACAGCCCGgUGGUCCCgacGAG- -5'
29941 5' -60 NC_006273.1 + 213102 0.66 0.848781
Target:  5'- aGCuGcUGUUcGGCCACCAGcgcguGGCUGCg- -3'
miRNA:   3'- -CG-CaACAGcCCGGUGGUC-----CCGACGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.