Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29941 | 5' | -60 | NC_006273.1 | + | 87679 | 0.73 | 0.461761 |
Target: 5'- uGCuGUUGUUGcggucugaaaagcGGCCACgGGGGCUGCg- -3' miRNA: 3'- -CG-CAACAGC-------------CCGGUGgUCCCGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 213102 | 0.66 | 0.848781 |
Target: 5'- aGCuGcUGUUcGGCCACCAGcgcguGGCUGCg- -3' miRNA: 3'- -CG-CaACAGcCCGGUGGUC-----CCGACGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 61774 | 0.66 | 0.841127 |
Target: 5'- uGCGUUGccgagcUCGGGCUACCAcuuuGGCuucgUGCgUCa -3' miRNA: 3'- -CGCAAC------AGCCCGGUGGUc---CCG----ACG-AG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 49949 | 0.66 | 0.81716 |
Target: 5'- aGCGU--UCGGGCCaggccacgugcaGCCGGGuGCcgcauuccUGCUCc -3' miRNA: 3'- -CGCAacAGCCCGG------------UGGUCC-CG--------ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 139806 | 0.67 | 0.799557 |
Target: 5'- cCGUcagGUCuccgGGGuCCGCCGGGGUuucgacgucccugUGCUCg -3' miRNA: 3'- cGCAa--CAG----CCC-GGUGGUCCCG-------------ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 167670 | 0.67 | 0.774267 |
Target: 5'- gGCGggGUC-GGCCGCCguucgucgucacGGGGCgGCg- -3' miRNA: 3'- -CGCaaCAGcCCGGUGG------------UCCCGaCGag -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 179330 | 0.67 | 0.765313 |
Target: 5'- cGCcgUGUCcGGCCACgaAGaGGCUGCUUa -3' miRNA: 3'- -CGcaACAGcCCGGUGg-UC-CCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 54977 | 0.67 | 0.765313 |
Target: 5'- cCGUcGUCGGGCaCAgacCCAuGGCcUGCUCg -3' miRNA: 3'- cGCAaCAGCCCG-GU---GGUcCCG-ACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 122020 | 0.69 | 0.65176 |
Target: 5'- gGCGUcgaGUCGGGCguguacugcgaCACCaggaucagcgAGGGCUGgCUCa -3' miRNA: 3'- -CGCAa--CAGCCCG-----------GUGG----------UCCCGAC-GAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 120736 | 0.69 | 0.65176 |
Target: 5'- -gGUUG-CGGGCCaggaugccggccGCCAGGGCgGC-Ca -3' miRNA: 3'- cgCAACaGCCCGG------------UGGUCCCGaCGaG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 133907 | 0.69 | 0.642025 |
Target: 5'- aGCGccUUGUCGcGGCC-CaugagguagaAGGGCUGUUCg -3' miRNA: 3'- -CGC--AACAGC-CCGGuGg---------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 40486 | 0.7 | 0.583705 |
Target: 5'- gGCGUgGUCGaGGCgGCCc-GGCUGCUg -3' miRNA: 3'- -CGCAaCAGC-CCGgUGGucCCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 46514 | 0.71 | 0.554887 |
Target: 5'- aUGUUGacccaGGGCUGCUccaacuuuguGGGGCUGCUCa -3' miRNA: 3'- cGCAACag---CCCGGUGG----------UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 86482 | 0.73 | 0.462645 |
Target: 5'- cGCGUUGUCaGGuCCAgCAGGucCUGCUCc -3' miRNA: 3'- -CGCAACAGcCC-GGUgGUCCc-GACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 83358 | 0.68 | 0.724746 |
Target: 5'- gGCGccgUGgugggaggacccgCGGGCCACgucGGGCUGCUg -3' miRNA: 3'- -CGCa--ACa------------GCCCGGUGgu-CCCGACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 121608 | 0.69 | 0.690484 |
Target: 5'- aUGUaGUC-GGCCA-CGGGGUUGCUCu -3' miRNA: 3'- cGCAaCAGcCCGGUgGUCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 183699 | 0.69 | 0.68085 |
Target: 5'- uCGUUGgcccacaucCaGGCCACCGGGGCUcagccuucucacGCUCc -3' miRNA: 3'- cGCAACa--------GcCCGGUGGUCCCGA------------CGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 198090 | 0.69 | 0.66148 |
Target: 5'- cCGgcaUGUCcGGCCGUCgcaAGGGCUGCUCg -3' miRNA: 3'- cGCa--ACAGcCCGGUGG---UCCCGACGAG- -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 131269 | 0.72 | 0.480496 |
Target: 5'- aGCGUcuUCGGGCaCACCgAGGGCcaggUGCUa -3' miRNA: 3'- -CGCAacAGCCCG-GUGG-UCCCG----ACGAg -5' |
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29941 | 5' | -60 | NC_006273.1 | + | 155133 | 0.66 | 0.848781 |
Target: 5'- cGCGUUGuuUCGuGGCUaauGCCgAGGGCcGCg- -3' miRNA: 3'- -CGCAAC--AGC-CCGG---UGG-UCCCGaCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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