miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 227072 0.66 0.999663
Target:  5'- uGgaUUCgGCAUug-GUGCGCCGCGu -3'
miRNA:   3'- gCaaAAGgUGUGcaaCAUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 225011 0.66 0.99958
Target:  5'- ----cUCuCACGCGUc---CGCCGCACa -3'
miRNA:   3'- gcaaaAG-GUGUGCAacauGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 103235 0.66 0.99958
Target:  5'- ----cUUCGCGCG-UGUGCGgCGUACc -3'
miRNA:   3'- gcaaaAGGUGUGCaACAUGCgGCGUG- -5'
29942 3' -50 NC_006273.1 + 93171 0.66 0.99958
Target:  5'- gCGUUUgcgUCCAcCGCGg---ACGCCGCuCa -3'
miRNA:   3'- -GCAAA---AGGU-GUGCaacaUGCGGCGuG- -5'
29942 3' -50 NC_006273.1 + 159994 0.66 0.999478
Target:  5'- gCGUgccgCCGCACGUgGUuucuuCCGCACa -3'
miRNA:   3'- -GCAaaa-GGUGUGCAaCAugc--GGCGUG- -5'
29942 3' -50 NC_006273.1 + 129229 0.66 0.999478
Target:  5'- uCGUggaaCUugAUGgcGUGCGCCGcCGCg -3'
miRNA:   3'- -GCAaaa-GGugUGCaaCAUGCGGC-GUG- -5'
29942 3' -50 NC_006273.1 + 94095 0.66 0.999478
Target:  5'- -uUUUUCCACugGgcg---GCCGCACc -3'
miRNA:   3'- gcAAAAGGUGugCaacaugCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 202780 0.66 0.999408
Target:  5'- aCGUgagCCGCGCGcugcugcgucaccgUGUgACGCCGgGCa -3'
miRNA:   3'- -GCAaaaGGUGUGCa-------------ACA-UGCGGCgUG- -5'
29942 3' -50 NC_006273.1 + 124429 0.66 0.999357
Target:  5'- aCGUgcugcggCCGCGCGggcGUGCGCgGCuCg -3'
miRNA:   3'- -GCAaaa----GGUGUGCaa-CAUGCGgCGuG- -5'
29942 3' -50 NC_006273.1 + 198960 0.66 0.999357
Target:  5'- gCGgaUUCUcugcggcgACACGggcaccgUGUACGCgGCGCu -3'
miRNA:   3'- -GCaaAAGG--------UGUGCa------ACAUGCGgCGUG- -5'
29942 3' -50 NC_006273.1 + 7344 0.66 0.999357
Target:  5'- ---aUUCCAC-CGUUG-ACGUCGCu- -3'
miRNA:   3'- gcaaAAGGUGuGCAACaUGCGGCGug -5'
29942 3' -50 NC_006273.1 + 146112 0.66 0.999357
Target:  5'- gCGUUcUCCAcCACGU----CGUCGCGCa -3'
miRNA:   3'- -GCAAaAGGU-GUGCAacauGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 39114 0.66 0.999344
Target:  5'- uCGUg--CCGCACGccUGcccgcauUACGCCGUGCc -3'
miRNA:   3'- -GCAaaaGGUGUGCa-AC-------AUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 44446 0.66 0.999212
Target:  5'- aGUgUUUCCGCGgccaGUUGcuggacCGCCGCGCu -3'
miRNA:   3'- gCA-AAAGGUGUg---CAACau----GCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 216209 0.66 0.999212
Target:  5'- -----gCCGCAuuCGUUGUACGgaGCGCg -3'
miRNA:   3'- gcaaaaGGUGU--GCAACAUGCggCGUG- -5'
29942 3' -50 NC_006273.1 + 45658 0.66 0.999212
Target:  5'- uGUg--CCACGuccucaucggcuUGUUGcaccagACGCCGCACa -3'
miRNA:   3'- gCAaaaGGUGU------------GCAACa-----UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 152888 0.67 0.999039
Target:  5'- gCGUguaacUUCCACuccuCGgccacGCGCCGCACc -3'
miRNA:   3'- -GCAa----AAGGUGu---GCaaca-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 92273 0.67 0.998835
Target:  5'- aCGUggUUUCCcgaACACGU---ACGCgGCACa -3'
miRNA:   3'- -GCA--AAAGG---UGUGCAacaUGCGgCGUG- -5'
29942 3' -50 NC_006273.1 + 10852 0.67 0.998595
Target:  5'- -----aCCAUACGguuguacgUGUACGCCaucaGCACg -3'
miRNA:   3'- gcaaaaGGUGUGCa-------ACAUGCGG----CGUG- -5'
29942 3' -50 NC_006273.1 + 70691 0.67 0.998595
Target:  5'- -----aCCACAcCGUUGUACGCgUGCuGCg -3'
miRNA:   3'- gcaaaaGGUGU-GCAACAUGCG-GCG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.