Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29942 | 3' | -50 | NC_006273.1 | + | 7344 | 0.66 | 0.999357 |
Target: 5'- ---aUUCCAC-CGUUG-ACGUCGCu- -3' miRNA: 3'- gcaaAAGGUGuGCAACaUGCGGCGug -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 198960 | 0.66 | 0.999357 |
Target: 5'- gCGgaUUCUcugcggcgACACGggcaccgUGUACGCgGCGCu -3' miRNA: 3'- -GCaaAAGG--------UGUGCa------ACAUGCGgCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 146112 | 0.66 | 0.999357 |
Target: 5'- gCGUUcUCCAcCACGU----CGUCGCGCa -3' miRNA: 3'- -GCAAaAGGU-GUGCAacauGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 202780 | 0.66 | 0.999408 |
Target: 5'- aCGUgagCCGCGCGcugcugcgucaccgUGUgACGCCGgGCa -3' miRNA: 3'- -GCAaaaGGUGUGCa-------------ACA-UGCGGCgUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 93171 | 0.66 | 0.99958 |
Target: 5'- gCGUUUgcgUCCAcCGCGg---ACGCCGCuCa -3' miRNA: 3'- -GCAAA---AGGU-GUGCaacaUGCGGCGuG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 103235 | 0.66 | 0.99958 |
Target: 5'- ----cUUCGCGCG-UGUGCGgCGUACc -3' miRNA: 3'- gcaaaAGGUGUGCaACAUGCgGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 159994 | 0.66 | 0.999478 |
Target: 5'- gCGUgccgCCGCACGUgGUuucuuCCGCACa -3' miRNA: 3'- -GCAaaa-GGUGUGCAaCAugc--GGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 227072 | 0.66 | 0.999663 |
Target: 5'- uGgaUUCgGCAUug-GUGCGCCGCGu -3' miRNA: 3'- gCaaAAGgUGUGcaaCAUGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 124429 | 0.66 | 0.999357 |
Target: 5'- aCGUgcugcggCCGCGCGggcGUGCGCgGCuCg -3' miRNA: 3'- -GCAaaa----GGUGUGCaa-CAUGCGgCGuG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 129229 | 0.66 | 0.999478 |
Target: 5'- uCGUggaaCUugAUGgcGUGCGCCGcCGCg -3' miRNA: 3'- -GCAaaa-GGugUGCaaCAUGCGGC-GUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 94095 | 0.66 | 0.999478 |
Target: 5'- -uUUUUCCACugGgcg---GCCGCACc -3' miRNA: 3'- gcAAAAGGUGugCaacaugCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 39114 | 0.66 | 0.999344 |
Target: 5'- uCGUg--CCGCACGccUGcccgcauUACGCCGUGCc -3' miRNA: 3'- -GCAaaaGGUGUGCa-AC-------AUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 44446 | 0.66 | 0.999212 |
Target: 5'- aGUgUUUCCGCGgccaGUUGcuggacCGCCGCGCu -3' miRNA: 3'- gCA-AAAGGUGUg---CAACau----GCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 216209 | 0.66 | 0.999212 |
Target: 5'- -----gCCGCAuuCGUUGUACGgaGCGCg -3' miRNA: 3'- gcaaaaGGUGU--GCAACAUGCggCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 45658 | 0.66 | 0.999212 |
Target: 5'- uGUg--CCACGuccucaucggcuUGUUGcaccagACGCCGCACa -3' miRNA: 3'- gCAaaaGGUGU------------GCAACa-----UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 225011 | 0.66 | 0.99958 |
Target: 5'- ----cUCuCACGCGUc---CGCCGCACa -3' miRNA: 3'- gcaaaAG-GUGUGCAacauGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 131465 | 0.67 | 0.998595 |
Target: 5'- gCGUg-UCCGCuuuCGUggcGUACGCCGUggcGCg -3' miRNA: 3'- -GCAaaAGGUGu--GCAa--CAUGCGGCG---UG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 10852 | 0.67 | 0.998595 |
Target: 5'- -----aCCAUACGguuguacgUGUACGCCaucaGCACg -3' miRNA: 3'- gcaaaaGGUGUGCa-------ACAUGCGG----CGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 156308 | 0.67 | 0.998315 |
Target: 5'- uGUUUgUCCGCuuuCGUggccugACGCCGCAg -3' miRNA: 3'- gCAAA-AGGUGu--GCAaca---UGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 181401 | 0.67 | 0.998315 |
Target: 5'- uCGUgUUCCAgggUugGgcGUACGCCGUg- -3' miRNA: 3'- -GCAaAAGGU---GugCaaCAUGCGGCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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