miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 43099 1.11 0.014241
Target:  5'- gCGUUUUCCACACGUUGUACGCCGCACu -3'
miRNA:   3'- -GCAAAAGGUGUGCAACAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 1311 0.79 0.703723
Target:  5'- aCGgaUUCUACGCGcgGgugACGCCGCGCa -3'
miRNA:   3'- -GCaaAAGGUGUGCaaCa--UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 196204 0.79 0.703723
Target:  5'- aCGgaUUCUACGCGcgGgugACGCCGCGCa -3'
miRNA:   3'- -GCaaAAGGUGUGCaaCa--UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 78970 0.73 0.945368
Target:  5'- -----cCCACGCGggaUGUACGCCGUccGCg -3'
miRNA:   3'- gcaaaaGGUGUGCa--ACAUGCGGCG--UG- -5'
29942 3' -50 NC_006273.1 + 167013 0.72 0.953821
Target:  5'- ----gUCCACAgGUUcUGCGCCGUGCu -3'
miRNA:   3'- gcaaaAGGUGUgCAAcAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 122525 0.72 0.957696
Target:  5'- aCGUUUUCCAaaGCGUUGaccACGCCGaGCa -3'
miRNA:   3'- -GCAAAAGGUg-UGCAACa--UGCGGCgUG- -5'
29942 3' -50 NC_006273.1 + 222176 0.71 0.97375
Target:  5'- -----aCCAgACGcUGUaACGCCGCACg -3'
miRNA:   3'- gcaaaaGGUgUGCaACA-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 51225 0.71 0.976337
Target:  5'- aCGUUUaUCaCACACGUUGUuuuuaccugaaAC-CCGCGCa -3'
miRNA:   3'- -GCAAA-AG-GUGUGCAACA-----------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 142433 0.71 0.978732
Target:  5'- -----aCCGCGCGcgUGUGCGCgCGUGCg -3'
miRNA:   3'- gcaaaaGGUGUGCa-ACAUGCG-GCGUG- -5'
29942 3' -50 NC_006273.1 + 158361 0.7 0.982977
Target:  5'- gCGUcgUUCGCGCGgcGUGCGCaCGcCGCu -3'
miRNA:   3'- -GCAaaAGGUGUGCaaCAUGCG-GC-GUG- -5'
29942 3' -50 NC_006273.1 + 61137 0.7 0.984843
Target:  5'- cCGUUUUgaGCGUGUUGUAaagguaGCCGCGCa -3'
miRNA:   3'- -GCAAAAggUGUGCAACAUg-----CGGCGUG- -5'
29942 3' -50 NC_006273.1 + 151087 0.7 0.988103
Target:  5'- cCGUgugcagCCACAgcUUGU-CGCCGCGCa -3'
miRNA:   3'- -GCAaaa---GGUGUgcAACAuGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 233696 0.7 0.988684
Target:  5'- --aUUUCCGCGCGggGgacgggguagccgaGCGCUGCGCc -3'
miRNA:   3'- gcaAAAGGUGUGCaaCa-------------UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 158834 0.7 0.989515
Target:  5'- ----gUCCACagcgcgccACGUccucGUGCGCCGCGCc -3'
miRNA:   3'- gcaaaAGGUG--------UGCAa---CAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 94058 0.69 0.990792
Target:  5'- --aUUUCCACugGaUGcGCGUCGUGCg -3'
miRNA:   3'- gcaAAAGGUGugCaACaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 408 0.69 0.991944
Target:  5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3'
miRNA:   3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 235239 0.69 0.991944
Target:  5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3'
miRNA:   3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 195301 0.69 0.991944
Target:  5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3'
miRNA:   3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 92929 0.69 0.992978
Target:  5'- uGUUacgUCACGCG-UGUGCGCacaCGCGCa -3'
miRNA:   3'- gCAAaa-GGUGUGCaACAUGCG---GCGUG- -5'
29942 3' -50 NC_006273.1 + 113766 0.69 0.994728
Target:  5'- aCGUggccugCgGCACGUggUGUGCG-CGCACg -3'
miRNA:   3'- -GCAaaa---GgUGUGCA--ACAUGCgGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.