miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 70691 0.67 0.998595
Target:  5'- -----aCCACAcCGUUGUACGCgUGCuGCg -3'
miRNA:   3'- gcaaaaGGUGU-GCAACAUGCG-GCG-UG- -5'
29942 3' -50 NC_006273.1 + 10852 0.67 0.998595
Target:  5'- -----aCCAUACGguuguacgUGUACGCCaucaGCACg -3'
miRNA:   3'- gcaaaaGGUGUGCa-------ACAUGCGG----CGUG- -5'
29942 3' -50 NC_006273.1 + 181401 0.67 0.998315
Target:  5'- uCGUgUUCCAgggUugGgcGUACGCCGUg- -3'
miRNA:   3'- -GCAaAAGGU---GugCaaCAUGCGGCGug -5'
29942 3' -50 NC_006273.1 + 156308 0.67 0.998315
Target:  5'- uGUUUgUCCGCuuuCGUggccugACGCCGCAg -3'
miRNA:   3'- gCAAA-AGGUGu--GCAaca---UGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 91964 0.67 0.998315
Target:  5'- cCGUUcUCCaACGCGcgGcAgGCCGCGCc -3'
miRNA:   3'- -GCAAaAGG-UGUGCaaCaUgCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 142241 0.67 0.998315
Target:  5'- cCGUUgcgUCCGC-CGUUGgugucgcugGC-CCGCACc -3'
miRNA:   3'- -GCAAa--AGGUGuGCAACa--------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 115192 0.67 0.998315
Target:  5'- aGUccUCCAgcCGUUGuUACGCCGaCGCg -3'
miRNA:   3'- gCAaaAGGUguGCAAC-AUGCGGC-GUG- -5'
29942 3' -50 NC_006273.1 + 76425 0.68 0.997611
Target:  5'- aCGUcgUCCuGCGCGagcUGUAcCGCCGCGu -3'
miRNA:   3'- -GCAaaAGG-UGUGCa--ACAU-GCGGCGUg -5'
29942 3' -50 NC_006273.1 + 117753 0.68 0.997611
Target:  5'- uCGUaacCCACGCGggG-GCGCCGUAg -3'
miRNA:   3'- -GCAaaaGGUGUGCaaCaUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 169160 0.68 0.997176
Target:  5'- gGUaUUCCuCGCGUUG-ACGuuGCAa -3'
miRNA:   3'- gCAaAAGGuGUGCAACaUGCggCGUg -5'
29942 3' -50 NC_006273.1 + 116659 0.68 0.997176
Target:  5'- --gUUUCUGgAgaUUGUACGCCGCGCu -3'
miRNA:   3'- gcaAAAGGUgUgcAACAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 60036 0.68 0.997176
Target:  5'- -----cCCGCGcCGgcuccUGUACGCCGCAa -3'
miRNA:   3'- gcaaaaGGUGU-GCa----ACAUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 231001 0.68 0.997176
Target:  5'- aCGUcgUCCAguCGUUGU--GCCGCGa -3'
miRNA:   3'- -GCAaaAGGUguGCAACAugCGGCGUg -5'
29942 3' -50 NC_006273.1 + 20548 0.68 0.997176
Target:  5'- gGUUUgugCaaagaacCACGUUGUgGCGUCGCACg -3'
miRNA:   3'- gCAAAa--Ggu-----GUGCAACA-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 46359 0.68 0.996677
Target:  5'- -----aCCACGCGgcUGU-CGUCGCACa -3'
miRNA:   3'- gcaaaaGGUGUGCa-ACAuGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 217396 0.68 0.995461
Target:  5'- gGUggUUCC-CugGUg--GCGCUGCACg -3'
miRNA:   3'- gCAa-AAGGuGugCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 56386 0.68 0.995461
Target:  5'- gCGUUUucUCCAuCGCGggaccGCGCCGUGCg -3'
miRNA:   3'- -GCAAA--AGGU-GUGCaaca-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 220055 0.68 0.995461
Target:  5'- aCGgugUUCCAUacgcgucugACGUUG-ACGCuCGCGCu -3'
miRNA:   3'- -GCaa-AAGGUG---------UGCAACaUGCG-GCGUG- -5'
29942 3' -50 NC_006273.1 + 113766 0.69 0.994728
Target:  5'- aCGUggccugCgGCACGUggUGUGCG-CGCACg -3'
miRNA:   3'- -GCAaaa---GgUGUGCA--ACAUGCgGCGUG- -5'
29942 3' -50 NC_006273.1 + 92929 0.69 0.992978
Target:  5'- uGUUacgUCACGCG-UGUGCGCacaCGCGCa -3'
miRNA:   3'- gCAAaa-GGUGUGCaACAUGCG---GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.