miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 408 0.69 0.991944
Target:  5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3'
miRNA:   3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 1311 0.79 0.703723
Target:  5'- aCGgaUUCUACGCGcgGgugACGCCGCGCa -3'
miRNA:   3'- -GCaaAAGGUGUGCaaCa--UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 7344 0.66 0.999357
Target:  5'- ---aUUCCAC-CGUUG-ACGUCGCu- -3'
miRNA:   3'- gcaaAAGGUGuGCAACaUGCGGCGug -5'
29942 3' -50 NC_006273.1 + 10852 0.67 0.998595
Target:  5'- -----aCCAUACGguuguacgUGUACGCCaucaGCACg -3'
miRNA:   3'- gcaaaaGGUGUGCa-------ACAUGCGG----CGUG- -5'
29942 3' -50 NC_006273.1 + 20548 0.68 0.997176
Target:  5'- gGUUUgugCaaagaacCACGUUGUgGCGUCGCACg -3'
miRNA:   3'- gCAAAa--Ggu-----GUGCAACA-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 39114 0.66 0.999344
Target:  5'- uCGUg--CCGCACGccUGcccgcauUACGCCGUGCc -3'
miRNA:   3'- -GCAaaaGGUGUGCa-AC-------AUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 43099 1.11 0.014241
Target:  5'- gCGUUUUCCACACGUUGUACGCCGCACu -3'
miRNA:   3'- -GCAAAAGGUGUGCAACAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 44446 0.66 0.999212
Target:  5'- aGUgUUUCCGCGgccaGUUGcuggacCGCCGCGCu -3'
miRNA:   3'- gCA-AAAGGUGUg---CAACau----GCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 45658 0.66 0.999212
Target:  5'- uGUg--CCACGuccucaucggcuUGUUGcaccagACGCCGCACa -3'
miRNA:   3'- gCAaaaGGUGU------------GCAACa-----UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 46359 0.68 0.996677
Target:  5'- -----aCCACGCGgcUGU-CGUCGCACa -3'
miRNA:   3'- gcaaaaGGUGUGCa-ACAuGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 51225 0.71 0.976337
Target:  5'- aCGUUUaUCaCACACGUUGUuuuuaccugaaAC-CCGCGCa -3'
miRNA:   3'- -GCAAA-AG-GUGUGCAACA-----------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 56386 0.68 0.995461
Target:  5'- gCGUUUucUCCAuCGCGggaccGCGCCGUGCg -3'
miRNA:   3'- -GCAAA--AGGU-GUGCaaca-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 60036 0.68 0.997176
Target:  5'- -----cCCGCGcCGgcuccUGUACGCCGCAa -3'
miRNA:   3'- gcaaaaGGUGU-GCa----ACAUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 61137 0.7 0.984843
Target:  5'- cCGUUUUgaGCGUGUUGUAaagguaGCCGCGCa -3'
miRNA:   3'- -GCAAAAggUGUGCAACAUg-----CGGCGUG- -5'
29942 3' -50 NC_006273.1 + 70691 0.67 0.998595
Target:  5'- -----aCCACAcCGUUGUACGCgUGCuGCg -3'
miRNA:   3'- gcaaaaGGUGU-GCAACAUGCG-GCG-UG- -5'
29942 3' -50 NC_006273.1 + 76425 0.68 0.997611
Target:  5'- aCGUcgUCCuGCGCGagcUGUAcCGCCGCGu -3'
miRNA:   3'- -GCAaaAGG-UGUGCa--ACAU-GCGGCGUg -5'
29942 3' -50 NC_006273.1 + 78970 0.73 0.945368
Target:  5'- -----cCCACGCGggaUGUACGCCGUccGCg -3'
miRNA:   3'- gcaaaaGGUGUGCa--ACAUGCGGCG--UG- -5'
29942 3' -50 NC_006273.1 + 91964 0.67 0.998315
Target:  5'- cCGUUcUCCaACGCGcgGcAgGCCGCGCc -3'
miRNA:   3'- -GCAAaAGG-UGUGCaaCaUgCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 92273 0.67 0.998835
Target:  5'- aCGUggUUUCCcgaACACGU---ACGCgGCACa -3'
miRNA:   3'- -GCA--AAAGG---UGUGCAacaUGCGgCGUG- -5'
29942 3' -50 NC_006273.1 + 92929 0.69 0.992978
Target:  5'- uGUUacgUCACGCG-UGUGCGCacaCGCGCa -3'
miRNA:   3'- gCAAaa-GGUGUGCaACAUGCG---GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.