miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 93171 0.66 0.99958
Target:  5'- gCGUUUgcgUCCAcCGCGg---ACGCCGCuCa -3'
miRNA:   3'- -GCAAA---AGGU-GUGCaacaUGCGGCGuG- -5'
29942 3' -50 NC_006273.1 + 94058 0.69 0.990792
Target:  5'- --aUUUCCACugGaUGcGCGUCGUGCg -3'
miRNA:   3'- gcaAAAGGUGugCaACaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 94095 0.66 0.999478
Target:  5'- -uUUUUCCACugGgcg---GCCGCACc -3'
miRNA:   3'- gcAAAAGGUGugCaacaugCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 103235 0.66 0.99958
Target:  5'- ----cUUCGCGCG-UGUGCGgCGUACc -3'
miRNA:   3'- gcaaaAGGUGUGCaACAUGCgGCGUG- -5'
29942 3' -50 NC_006273.1 + 113766 0.69 0.994728
Target:  5'- aCGUggccugCgGCACGUggUGUGCG-CGCACg -3'
miRNA:   3'- -GCAaaa---GgUGUGCA--ACAUGCgGCGUG- -5'
29942 3' -50 NC_006273.1 + 115192 0.67 0.998315
Target:  5'- aGUccUCCAgcCGUUGuUACGCCGaCGCg -3'
miRNA:   3'- gCAaaAGGUguGCAAC-AUGCGGC-GUG- -5'
29942 3' -50 NC_006273.1 + 116659 0.68 0.997176
Target:  5'- --gUUUCUGgAgaUUGUACGCCGCGCu -3'
miRNA:   3'- gcaAAAGGUgUgcAACAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 117753 0.68 0.997611
Target:  5'- uCGUaacCCACGCGggG-GCGCCGUAg -3'
miRNA:   3'- -GCAaaaGGUGUGCaaCaUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 122525 0.72 0.957696
Target:  5'- aCGUUUUCCAaaGCGUUGaccACGCCGaGCa -3'
miRNA:   3'- -GCAAAAGGUg-UGCAACa--UGCGGCgUG- -5'
29942 3' -50 NC_006273.1 + 124429 0.66 0.999357
Target:  5'- aCGUgcugcggCCGCGCGggcGUGCGCgGCuCg -3'
miRNA:   3'- -GCAaaa----GGUGUGCaa-CAUGCGgCGuG- -5'
29942 3' -50 NC_006273.1 + 129229 0.66 0.999478
Target:  5'- uCGUggaaCUugAUGgcGUGCGCCGcCGCg -3'
miRNA:   3'- -GCAaaa-GGugUGCaaCAUGCGGC-GUG- -5'
29942 3' -50 NC_006273.1 + 131465 0.67 0.998595
Target:  5'- gCGUg-UCCGCuuuCGUggcGUACGCCGUggcGCg -3'
miRNA:   3'- -GCAaaAGGUGu--GCAa--CAUGCGGCG---UG- -5'
29942 3' -50 NC_006273.1 + 142241 0.67 0.998315
Target:  5'- cCGUUgcgUCCGC-CGUUGgugucgcugGC-CCGCACc -3'
miRNA:   3'- -GCAAa--AGGUGuGCAACa--------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 142433 0.71 0.978732
Target:  5'- -----aCCGCGCGcgUGUGCGCgCGUGCg -3'
miRNA:   3'- gcaaaaGGUGUGCa-ACAUGCG-GCGUG- -5'
29942 3' -50 NC_006273.1 + 146112 0.66 0.999357
Target:  5'- gCGUUcUCCAcCACGU----CGUCGCGCa -3'
miRNA:   3'- -GCAAaAGGU-GUGCAacauGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 151087 0.7 0.988103
Target:  5'- cCGUgugcagCCACAgcUUGU-CGCCGCGCa -3'
miRNA:   3'- -GCAaaa---GGUGUgcAACAuGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 152433 0.67 0.998595
Target:  5'- gGUUcggCCGcCACGUacaagcggaUGUGCuuGCCGCGCa -3'
miRNA:   3'- gCAAaa-GGU-GUGCA---------ACAUG--CGGCGUG- -5'
29942 3' -50 NC_006273.1 + 152888 0.67 0.999039
Target:  5'- gCGUguaacUUCCACuccuCGgccacGCGCCGCACc -3'
miRNA:   3'- -GCAa----AAGGUGu---GCaaca-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 156308 0.67 0.998315
Target:  5'- uGUUUgUCCGCuuuCGUggccugACGCCGCAg -3'
miRNA:   3'- gCAAA-AGGUGu--GCAaca---UGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 158361 0.7 0.982977
Target:  5'- gCGUcgUUCGCGCGgcGUGCGCaCGcCGCu -3'
miRNA:   3'- -GCAaaAGGUGUGCaaCAUGCG-GC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.