Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29942 | 3' | -50 | NC_006273.1 | + | 235239 | 0.69 | 0.991944 |
Target: 5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3' miRNA: 3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 233696 | 0.7 | 0.988684 |
Target: 5'- --aUUUCCGCGCGggGgacgggguagccgaGCGCUGCGCc -3' miRNA: 3'- gcaAAAGGUGUGCaaCa-------------UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 231001 | 0.68 | 0.997176 |
Target: 5'- aCGUcgUCCAguCGUUGU--GCCGCGa -3' miRNA: 3'- -GCAaaAGGUguGCAACAugCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 227072 | 0.66 | 0.999663 |
Target: 5'- uGgaUUCgGCAUug-GUGCGCCGCGu -3' miRNA: 3'- gCaaAAGgUGUGcaaCAUGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 225011 | 0.66 | 0.99958 |
Target: 5'- ----cUCuCACGCGUc---CGCCGCACa -3' miRNA: 3'- gcaaaAG-GUGUGCAacauGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 222176 | 0.71 | 0.97375 |
Target: 5'- -----aCCAgACGcUGUaACGCCGCACg -3' miRNA: 3'- gcaaaaGGUgUGCaACA-UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 220055 | 0.68 | 0.995461 |
Target: 5'- aCGgugUUCCAUacgcgucugACGUUG-ACGCuCGCGCu -3' miRNA: 3'- -GCaa-AAGGUG---------UGCAACaUGCG-GCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 217396 | 0.68 | 0.995461 |
Target: 5'- gGUggUUCC-CugGUg--GCGCUGCACg -3' miRNA: 3'- gCAa-AAGGuGugCAacaUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 216209 | 0.66 | 0.999212 |
Target: 5'- -----gCCGCAuuCGUUGUACGgaGCGCg -3' miRNA: 3'- gcaaaaGGUGU--GCAACAUGCggCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 202780 | 0.66 | 0.999408 |
Target: 5'- aCGUgagCCGCGCGcugcugcgucaccgUGUgACGCCGgGCa -3' miRNA: 3'- -GCAaaaGGUGUGCa-------------ACA-UGCGGCgUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 198960 | 0.66 | 0.999357 |
Target: 5'- gCGgaUUCUcugcggcgACACGggcaccgUGUACGCgGCGCu -3' miRNA: 3'- -GCaaAAGG--------UGUGCa------ACAUGCGgCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 196204 | 0.79 | 0.703723 |
Target: 5'- aCGgaUUCUACGCGcgGgugACGCCGCGCa -3' miRNA: 3'- -GCaaAAGGUGUGCaaCa--UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 195301 | 0.69 | 0.991944 |
Target: 5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3' miRNA: 3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 181401 | 0.67 | 0.998315 |
Target: 5'- uCGUgUUCCAgggUugGgcGUACGCCGUg- -3' miRNA: 3'- -GCAaAAGGU---GugCaaCAUGCGGCGug -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 169160 | 0.68 | 0.997176 |
Target: 5'- gGUaUUCCuCGCGUUG-ACGuuGCAa -3' miRNA: 3'- gCAaAAGGuGUGCAACaUGCggCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 167013 | 0.72 | 0.953821 |
Target: 5'- ----gUCCACAgGUUcUGCGCCGUGCu -3' miRNA: 3'- gcaaaAGGUGUgCAAcAUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 159994 | 0.66 | 0.999478 |
Target: 5'- gCGUgccgCCGCACGUgGUuucuuCCGCACa -3' miRNA: 3'- -GCAaaa-GGUGUGCAaCAugc--GGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 158834 | 0.7 | 0.989515 |
Target: 5'- ----gUCCACagcgcgccACGUccucGUGCGCCGCGCc -3' miRNA: 3'- gcaaaAGGUG--------UGCAa---CAUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 158361 | 0.7 | 0.982977 |
Target: 5'- gCGUcgUUCGCGCGgcGUGCGCaCGcCGCu -3' miRNA: 3'- -GCAaaAGGUGUGCaaCAUGCG-GC-GUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 156308 | 0.67 | 0.998315 |
Target: 5'- uGUUUgUCCGCuuuCGUggccugACGCCGCAg -3' miRNA: 3'- gCAAA-AGGUGu--GCAaca---UGCGGCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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