miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 3' -50 NC_006273.1 + 92273 0.67 0.998835
Target:  5'- aCGUggUUUCCcgaACACGU---ACGCgGCACa -3'
miRNA:   3'- -GCA--AAAGG---UGUGCAacaUGCGgCGUG- -5'
29942 3' -50 NC_006273.1 + 231001 0.68 0.997176
Target:  5'- aCGUcgUCCAguCGUUGU--GCCGCGa -3'
miRNA:   3'- -GCAaaAGGUguGCAACAugCGGCGUg -5'
29942 3' -50 NC_006273.1 + 60036 0.68 0.997176
Target:  5'- -----cCCGCGcCGgcuccUGUACGCCGCAa -3'
miRNA:   3'- gcaaaaGGUGU-GCa----ACAUGCGGCGUg -5'
29942 3' -50 NC_006273.1 + 116659 0.68 0.997176
Target:  5'- --gUUUCUGgAgaUUGUACGCCGCGCu -3'
miRNA:   3'- gcaAAAGGUgUgcAACAUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 76425 0.68 0.997611
Target:  5'- aCGUcgUCCuGCGCGagcUGUAcCGCCGCGu -3'
miRNA:   3'- -GCAaaAGG-UGUGCa--ACAU-GCGGCGUg -5'
29942 3' -50 NC_006273.1 + 115192 0.67 0.998315
Target:  5'- aGUccUCCAgcCGUUGuUACGCCGaCGCg -3'
miRNA:   3'- gCAaaAGGUguGCAAC-AUGCGGC-GUG- -5'
29942 3' -50 NC_006273.1 + 142241 0.67 0.998315
Target:  5'- cCGUUgcgUCCGC-CGUUGgugucgcugGC-CCGCACc -3'
miRNA:   3'- -GCAAa--AGGUGuGCAACa--------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 70691 0.67 0.998595
Target:  5'- -----aCCACAcCGUUGUACGCgUGCuGCg -3'
miRNA:   3'- gcaaaaGGUGU-GCAACAUGCG-GCG-UG- -5'
29942 3' -50 NC_006273.1 + 152433 0.67 0.998595
Target:  5'- gGUUcggCCGcCACGUacaagcggaUGUGCuuGCCGCGCa -3'
miRNA:   3'- gCAAaa-GGU-GUGCA---------ACAUG--CGGCGUG- -5'
29942 3' -50 NC_006273.1 + 20548 0.68 0.997176
Target:  5'- gGUUUgugCaaagaacCACGUUGUgGCGUCGCACg -3'
miRNA:   3'- gCAAAa--Ggu-----GUGCAACA-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 220055 0.68 0.995461
Target:  5'- aCGgugUUCCAUacgcgucugACGUUG-ACGCuCGCGCu -3'
miRNA:   3'- -GCaa-AAGGUG---------UGCAACaUGCG-GCGUG- -5'
29942 3' -50 NC_006273.1 + 56386 0.68 0.995461
Target:  5'- gCGUUUucUCCAuCGCGggaccGCGCCGUGCg -3'
miRNA:   3'- -GCAAA--AGGU-GUGCaaca-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 222176 0.71 0.97375
Target:  5'- -----aCCAgACGcUGUaACGCCGCACg -3'
miRNA:   3'- gcaaaaGGUgUGCaACA-UGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 51225 0.71 0.976337
Target:  5'- aCGUUUaUCaCACACGUUGUuuuuaccugaaAC-CCGCGCa -3'
miRNA:   3'- -GCAAA-AG-GUGUGCAACA-----------UGcGGCGUG- -5'
29942 3' -50 NC_006273.1 + 61137 0.7 0.984843
Target:  5'- cCGUUUUgaGCGUGUUGUAaagguaGCCGCGCa -3'
miRNA:   3'- -GCAAAAggUGUGCAACAUg-----CGGCGUG- -5'
29942 3' -50 NC_006273.1 + 151087 0.7 0.988103
Target:  5'- cCGUgugcagCCACAgcUUGU-CGCCGCGCa -3'
miRNA:   3'- -GCAaaa---GGUGUgcAACAuGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 94058 0.69 0.990792
Target:  5'- --aUUUCCACugGaUGcGCGUCGUGCg -3'
miRNA:   3'- gcaAAAGGUGugCaACaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 195301 0.69 0.991944
Target:  5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3'
miRNA:   3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5'
29942 3' -50 NC_006273.1 + 92929 0.69 0.992978
Target:  5'- uGUUacgUCACGCG-UGUGCGCacaCGCGCa -3'
miRNA:   3'- gCAAaa-GGUGUGCaACAUGCG---GCGUG- -5'
29942 3' -50 NC_006273.1 + 217396 0.68 0.995461
Target:  5'- gGUggUUCC-CugGUg--GCGCUGCACg -3'
miRNA:   3'- gCAa-AAGGuGugCAacaUGCGGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.