Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29942 | 3' | -50 | NC_006273.1 | + | 43099 | 1.11 | 0.014241 |
Target: 5'- gCGUUUUCCACACGUUGUACGCCGCACu -3' miRNA: 3'- -GCAAAAGGUGUGCAACAUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 156308 | 0.67 | 0.998315 |
Target: 5'- uGUUUgUCCGCuuuCGUggccugACGCCGCAg -3' miRNA: 3'- gCAAA-AGGUGu--GCAaca---UGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 131465 | 0.67 | 0.998595 |
Target: 5'- gCGUg-UCCGCuuuCGUggcGUACGCCGUggcGCg -3' miRNA: 3'- -GCAaaAGGUGu--GCAa--CAUGCGGCG---UG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 227072 | 0.66 | 0.999663 |
Target: 5'- uGgaUUCgGCAUug-GUGCGCCGCGu -3' miRNA: 3'- gCaaAAGgUGUGcaaCAUGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 122525 | 0.72 | 0.957696 |
Target: 5'- aCGUUUUCCAaaGCGUUGaccACGCCGaGCa -3' miRNA: 3'- -GCAAAAGGUg-UGCAACa--UGCGGCgUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 142433 | 0.71 | 0.978732 |
Target: 5'- -----aCCGCGCGcgUGUGCGCgCGUGCg -3' miRNA: 3'- gcaaaaGGUGUGCa-ACAUGCG-GCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 233696 | 0.7 | 0.988684 |
Target: 5'- --aUUUCCGCGCGggGgacgggguagccgaGCGCUGCGCc -3' miRNA: 3'- gcaAAAGGUGUGCaaCa-------------UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 158834 | 0.7 | 0.989515 |
Target: 5'- ----gUCCACagcgcgccACGUccucGUGCGCCGCGCc -3' miRNA: 3'- gcaaaAGGUG--------UGCAa---CAUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 113766 | 0.69 | 0.994728 |
Target: 5'- aCGUggccugCgGCACGUggUGUGCG-CGCACg -3' miRNA: 3'- -GCAaaa---GgUGUGCA--ACAUGCgGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 91964 | 0.67 | 0.998315 |
Target: 5'- cCGUUcUCCaACGCGcgGcAgGCCGCGCc -3' miRNA: 3'- -GCAAaAGG-UGUGCaaCaUgCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 169160 | 0.68 | 0.997176 |
Target: 5'- gGUaUUCCuCGCGUUG-ACGuuGCAa -3' miRNA: 3'- gCAaAAGGuGUGCAACaUGCggCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 235239 | 0.69 | 0.991944 |
Target: 5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3' miRNA: 3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 1311 | 0.79 | 0.703723 |
Target: 5'- aCGgaUUCUACGCGcgGgugACGCCGCGCa -3' miRNA: 3'- -GCaaAAGGUGUGCaaCa--UGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 117753 | 0.68 | 0.997611 |
Target: 5'- uCGUaacCCACGCGggG-GCGCCGUAg -3' miRNA: 3'- -GCAaaaGGUGUGCaaCaUGCGGCGUg -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 78970 | 0.73 | 0.945368 |
Target: 5'- -----cCCACGCGggaUGUACGCCGUccGCg -3' miRNA: 3'- gcaaaaGGUGUGCa--ACAUGCGGCG--UG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 408 | 0.69 | 0.991944 |
Target: 5'- gCGUcugcUUUUCGC-CGUgc-GCGCCGCACg -3' miRNA: 3'- -GCA----AAAGGUGuGCAacaUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 181401 | 0.67 | 0.998315 |
Target: 5'- uCGUgUUCCAgggUugGgcGUACGCCGUg- -3' miRNA: 3'- -GCAaAAGGU---GugCaaCAUGCGGCGug -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 10852 | 0.67 | 0.998595 |
Target: 5'- -----aCCAUACGguuguacgUGUACGCCaucaGCACg -3' miRNA: 3'- gcaaaaGGUGUGCa-------ACAUGCGG----CGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 167013 | 0.72 | 0.953821 |
Target: 5'- ----gUCCACAgGUUcUGCGCCGUGCu -3' miRNA: 3'- gcaaaAGGUGUgCAAcAUGCGGCGUG- -5' |
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29942 | 3' | -50 | NC_006273.1 | + | 158361 | 0.7 | 0.982977 |
Target: 5'- gCGUcgUUCGCGCGgcGUGCGCaCGcCGCu -3' miRNA: 3'- -GCAaaAGGUGUGCaaCAUGCG-GC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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