miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 5' -52.3 NC_006273.1 + 177091 0.66 0.997037
Target:  5'- uGGUuUGGUuccgACCGCuc-AGGUACCa -3'
miRNA:   3'- cCCAcACCAua--UGGCGcaaUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 1479 0.66 0.996531
Target:  5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3'
miRNA:   3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 196372 0.66 0.996531
Target:  5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3'
miRNA:   3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 54950 0.66 0.996531
Target:  5'- cGGGUGguggcggcGGUGgcguggaaACCGuCGUcGGGCACa -3'
miRNA:   3'- -CCCACa-------CCAUa-------UGGC-GCAaUCCGUGg -5'
29942 5' -52.3 NC_006273.1 + 226729 0.66 0.995956
Target:  5'- ---gGUGGUA-ACCGUGUUuucGGCGCa -3'
miRNA:   3'- cccaCACCAUaUGGCGCAAu--CCGUGg -5'
29942 5' -52.3 NC_006273.1 + 34028 0.66 0.995956
Target:  5'- cGGGaaugGUGGgacgccACCGCGgaGGGCGa- -3'
miRNA:   3'- -CCCa---CACCaua---UGGCGCaaUCCGUgg -5'
29942 5' -52.3 NC_006273.1 + 80816 0.66 0.995956
Target:  5'- gGGGuUGuUGGUGgcaacgacgugGCCGCG--GGGCGCa -3'
miRNA:   3'- -CCC-AC-ACCAUa----------UGGCGCaaUCCGUGg -5'
29942 5' -52.3 NC_006273.1 + 152832 0.66 0.995956
Target:  5'- aGGGUcUGGacgACCucaugaGCGgccUGGGCGCCg -3'
miRNA:   3'- -CCCAcACCauaUGG------CGCa--AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 137723 0.66 0.995832
Target:  5'- aGGUGUGGUGUcgauGgUGCGUUuuuuuuugccucGGCACg -3'
miRNA:   3'- cCCACACCAUA----UgGCGCAAu-----------CCGUGg -5'
29942 5' -52.3 NC_006273.1 + 177163 0.66 0.995305
Target:  5'- -aGUGUGGgcu-UCGCGc--GGCACCg -3'
miRNA:   3'- ccCACACCauauGGCGCaauCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 219838 0.66 0.995305
Target:  5'- uGGUGUcguagcGGUGUAgcaccaaCGUGUUGGGguCCa -3'
miRNA:   3'- cCCACA------CCAUAUg------GCGCAAUCCguGG- -5'
29942 5' -52.3 NC_006273.1 + 36824 0.66 0.995305
Target:  5'- -cGUGUGGUGUaACUGCGgagacuGGCAg- -3'
miRNA:   3'- ccCACACCAUA-UGGCGCaau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 123912 0.66 0.995235
Target:  5'- aGGUGcaacuggaucagaUGGUagGUGCCGCGgu--GCACCc -3'
miRNA:   3'- cCCAC-------------ACCA--UAUGGCGCaaucCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 149476 0.66 0.994571
Target:  5'- gGGGUGgugGGUGguuUCGCGgcGGGaCAUUg -3'
miRNA:   3'- -CCCACa--CCAUau-GGCGCaaUCC-GUGG- -5'
29942 5' -52.3 NC_006273.1 + 46958 0.66 0.994571
Target:  5'- cGGGUGUGGUGgcugagugacGCCGgCGUaagAGaaACCg -3'
miRNA:   3'- -CCCACACCAUa---------UGGC-GCAa--UCcgUGG- -5'
29942 5' -52.3 NC_006273.1 + 83329 0.67 0.992826
Target:  5'- cGGGUggacccggcGUGGUGggACC-CGgc-GGCGCCg -3'
miRNA:   3'- -CCCA---------CACCAUa-UGGcGCaauCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 235014 0.67 0.9918
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 183 0.67 0.9918
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 195076 0.67 0.9918
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 102387 0.67 0.99066
Target:  5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3'
miRNA:   3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.