Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 46958 | 0.66 | 0.994571 |
Target: 5'- cGGGUGUGGUGgcugagugacGCCGgCGUaagAGaaACCg -3' miRNA: 3'- -CCCACACCAUa---------UGGC-GCAa--UCcgUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 149476 | 0.66 | 0.994571 |
Target: 5'- gGGGUGgugGGUGguuUCGCGgcGGGaCAUUg -3' miRNA: 3'- -CCCACa--CCAUau-GGCGCaaUCC-GUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 123912 | 0.66 | 0.995235 |
Target: 5'- aGGUGcaacuggaucagaUGGUagGUGCCGCGgu--GCACCc -3' miRNA: 3'- cCCAC-------------ACCA--UAUGGCGCaaucCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 219838 | 0.66 | 0.995305 |
Target: 5'- uGGUGUcguagcGGUGUAgcaccaaCGUGUUGGGguCCa -3' miRNA: 3'- cCCACA------CCAUAUg------GCGCAAUCCguGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 34028 | 0.66 | 0.995956 |
Target: 5'- cGGGaaugGUGGgacgccACCGCGgaGGGCGa- -3' miRNA: 3'- -CCCa---CACCaua---UGGCGCaaUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 54950 | 0.66 | 0.996531 |
Target: 5'- cGGGUGguggcggcGGUGgcguggaaACCGuCGUcGGGCACa -3' miRNA: 3'- -CCCACa-------CCAUa-------UGGC-GCAaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196372 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 177091 | 0.66 | 0.997037 |
Target: 5'- uGGUuUGGUuccgACCGCuc-AGGUACCa -3' miRNA: 3'- cCCAcACCAua--UGGCGcaaUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 80816 | 0.66 | 0.995956 |
Target: 5'- gGGGuUGuUGGUGgcaacgacgugGCCGCG--GGGCGCa -3' miRNA: 3'- -CCC-AC-ACCAUa----------UGGCGCaaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 1479 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 152832 | 0.66 | 0.995956 |
Target: 5'- aGGGUcUGGacgACCucaugaGCGgccUGGGCGCCg -3' miRNA: 3'- -CCCAcACCauaUGG------CGCa--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 137723 | 0.66 | 0.995832 |
Target: 5'- aGGUGUGGUGUcgauGgUGCGUUuuuuuuugccucGGCACg -3' miRNA: 3'- cCCACACCAUA----UgGCGCAAu-----------CCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 36824 | 0.66 | 0.995305 |
Target: 5'- -cGUGUGGUGUaACUGCGgagacuGGCAg- -3' miRNA: 3'- ccCACACCAUA-UGGCGCaau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 177163 | 0.66 | 0.995305 |
Target: 5'- -aGUGUGGgcu-UCGCGc--GGCACCg -3' miRNA: 3'- ccCACACCauauGGCGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 226729 | 0.66 | 0.995956 |
Target: 5'- ---gGUGGUA-ACCGUGUUuucGGCGCa -3' miRNA: 3'- cccaCACCAUaUGGCGCAAu--CCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 102387 | 0.67 | 0.99066 |
Target: 5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3' miRNA: 3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 235014 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 45830 | 0.67 | 0.9894 |
Target: 5'- uGGUGUGGcUGUGgcuCgGCGUcGGGCuCCu -3' miRNA: 3'- cCCACACC-AUAU---GgCGCAaUCCGuGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 83329 | 0.67 | 0.992826 |
Target: 5'- cGGGUggacccggcGUGGUGggACC-CGgc-GGCGCCg -3' miRNA: 3'- -CCCA---------CACCAUa-UGGcGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195076 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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