Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 43137 | 1.16 | 0.004247 |
Target: 5'- cGGGUGUGGUAUACCGCGUUAGGCACCg -3' miRNA: 3'- -CCCACACCAUAUGGCGCAAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 194965 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 234903 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 72 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 193577 | 0.76 | 0.733313 |
Target: 5'- uGGGaUGUGGcucuguuggaaGUGCCGCGUUGGGCGg- -3' miRNA: 3'- -CCC-ACACCa----------UAUGGCGCAAUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 191479 | 0.72 | 0.904872 |
Target: 5'- aGGUGgagcGGUAcgacUGCCGCGcgUAGGUACg -3' miRNA: 3'- cCCACa---CCAU----AUGGCGCa-AUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 108182 | 0.72 | 0.910902 |
Target: 5'- cGGcGUuucGGacGUACCGCGUUuGGGCGCCa -3' miRNA: 3'- cCCaCA---CCa-UAUGGCGCAA-UCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 213295 | 0.71 | 0.927605 |
Target: 5'- -aGUGUGGUcaaACCGUGgc-GGCACCc -3' miRNA: 3'- ccCACACCAua-UGGCGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 101174 | 0.7 | 0.946625 |
Target: 5'- cGGGcGUGGcg-GCCGU---AGGCGCCu -3' miRNA: 3'- -CCCaCACCauaUGGCGcaaUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195031 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 1617 | 0.7 | 0.950806 |
Target: 5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3' miRNA: 3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 169682 | 0.7 | 0.950806 |
Target: 5'- ---cGUGGccguUGCCGCGUUA-GCGCCg -3' miRNA: 3'- cccaCACCau--AUGGCGCAAUcCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 138 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 234969 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196510 | 0.7 | 0.950806 |
Target: 5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3' miRNA: 3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 57455 | 0.7 | 0.953599 |
Target: 5'- cGGGUGUGGcUGUcuguuugucugugcGCCGUGgugcUGGGUcaguGCCa -3' miRNA: 3'- -CCCACACC-AUA--------------UGGCGCa---AUCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 12305 | 0.7 | 0.954763 |
Target: 5'- -cGUGUGGUGUuuagACCGCGauugcgGGGUGCUu -3' miRNA: 3'- ccCACACCAUA----UGGCGCaa----UCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 113007 | 0.7 | 0.958498 |
Target: 5'- gGGGUGUGGUG-ACgGUG--GGGCuuuGCCu -3' miRNA: 3'- -CCCACACCAUaUGgCGCaaUCCG---UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 165810 | 0.7 | 0.958498 |
Target: 5'- -cGUGUGGcucugAUGCUGCGUgAGGUaggGCCg -3' miRNA: 3'- ccCACACCa----UAUGGCGCAaUCCG---UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 115569 | 0.7 | 0.962016 |
Target: 5'- gGGGUgGUGGUGcUGCUGCuGUugUGGGUGCg -3' miRNA: 3'- -CCCA-CACCAU-AUGGCG-CA--AUCCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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