Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 202487 | 0.69 | 0.968419 |
Target: 5'- uGGUGacccagGGUcaGUugCGCGUcaucGGCACCa -3' miRNA: 3'- cCCACa-----CCA--UAugGCGCAau--CCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 41274 | 0.69 | 0.978854 |
Target: 5'- gGGGUGguggacacGGUGUuuugagaaGCCGUGgaagucgUAGGCAUCc -3' miRNA: 3'- -CCCACa-------CCAUA--------UGGCGCa------AUCCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 217039 | 0.68 | 0.981006 |
Target: 5'- cGGUucgGUGGUGgcgaACgGCGUuugUGGGUGCCg -3' miRNA: 3'- cCCA---CACCAUa---UGgCGCA---AUCCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 141043 | 0.68 | 0.984814 |
Target: 5'- aGGGcgGUGGgacgGgcCCGCGgacggaccGGCGCCg -3' miRNA: 3'- -CCCa-CACCa---UauGGCGCaau-----CCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 48572 | 0.68 | 0.984814 |
Target: 5'- gGGGUGagGGgcggcAUGCCGUuggcGGCGCCg -3' miRNA: 3'- -CCCACa-CCa----UAUGGCGcaauCCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 89359 | 0.68 | 0.986485 |
Target: 5'- uGGGUGUGucggGCCGCGgcagucgcUUAGcCACCa -3' miRNA: 3'- -CCCACACcauaUGGCGC--------AAUCcGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 45830 | 0.67 | 0.9894 |
Target: 5'- uGGUGUGGcUGUGgcuCgGCGUcGGGCuCCu -3' miRNA: 3'- cCCACACC-AUAU---GgCGCAaUCCGuGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 164225 | 0.67 | 0.99066 |
Target: 5'- cGG-GUGGUGUugCGCGgcgacGGGUGgCa -3' miRNA: 3'- cCCaCACCAUAugGCGCaa---UCCGUgG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 102387 | 0.67 | 0.99066 |
Target: 5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3' miRNA: 3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 183 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 195076 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 235014 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 83329 | 0.67 | 0.992826 |
Target: 5'- cGGGUggacccggcGUGGUGggACC-CGgc-GGCGCCg -3' miRNA: 3'- -CCCA---------CACCAUa-UGGcGCaauCCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 46958 | 0.66 | 0.994571 |
Target: 5'- cGGGUGUGGUGgcugagugacGCCGgCGUaagAGaaACCg -3' miRNA: 3'- -CCCACACCAUa---------UGGC-GCAa--UCcgUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 149476 | 0.66 | 0.994571 |
Target: 5'- gGGGUGgugGGUGguuUCGCGgcGGGaCAUUg -3' miRNA: 3'- -CCCACa--CCAUau-GGCGCaaUCC-GUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 123912 | 0.66 | 0.995235 |
Target: 5'- aGGUGcaacuggaucagaUGGUagGUGCCGCGgu--GCACCc -3' miRNA: 3'- cCCAC-------------ACCA--UAUGGCGCaaucCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 219838 | 0.66 | 0.995305 |
Target: 5'- uGGUGUcguagcGGUGUAgcaccaaCGUGUUGGGguCCa -3' miRNA: 3'- cCCACA------CCAUAUg------GCGCAAUCCguGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 36824 | 0.66 | 0.995305 |
Target: 5'- -cGUGUGGUGUaACUGCGgagacuGGCAg- -3' miRNA: 3'- ccCACACCAUA-UGGCGCaau---CCGUgg -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 177163 | 0.66 | 0.995305 |
Target: 5'- -aGUGUGGgcu-UCGCGc--GGCACCg -3' miRNA: 3'- ccCACACCauauGGCGCaauCCGUGG- -5' |
|||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 137723 | 0.66 | 0.995832 |
Target: 5'- aGGUGUGGUGUcgauGgUGCGUUuuuuuuugccucGGCACg -3' miRNA: 3'- cCCACACCAUA----UgGCGCAAu-----------CCGUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home