miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 5' -52.3 NC_006273.1 + 102387 0.67 0.99066
Target:  5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3'
miRNA:   3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5'
29942 5' -52.3 NC_006273.1 + 45830 0.67 0.9894
Target:  5'- uGGUGUGGcUGUGgcuCgGCGUcGGGCuCCu -3'
miRNA:   3'- cCCACACC-AUAU---GgCGCAaUCCGuGG- -5'
29942 5' -52.3 NC_006273.1 + 89359 0.68 0.986485
Target:  5'- uGGGUGUGucggGCCGCGgcagucgcUUAGcCACCa -3'
miRNA:   3'- -CCCACACcauaUGGCGC--------AAUCcGUGG- -5'
29942 5' -52.3 NC_006273.1 + 48572 0.68 0.984814
Target:  5'- gGGGUGagGGgcggcAUGCCGUuggcGGCGCCg -3'
miRNA:   3'- -CCCACa-CCa----UAUGGCGcaauCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 141043 0.68 0.984814
Target:  5'- aGGGcgGUGGgacgGgcCCGCGgacggaccGGCGCCg -3'
miRNA:   3'- -CCCa-CACCa---UauGGCGCaau-----CCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 217039 0.68 0.981006
Target:  5'- cGGUucgGUGGUGgcgaACgGCGUuugUGGGUGCCg -3'
miRNA:   3'- cCCA---CACCAUa---UGgCGCA---AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 41274 0.69 0.978854
Target:  5'- gGGGUGguggacacGGUGUuuugagaaGCCGUGgaagucgUAGGCAUCc -3'
miRNA:   3'- -CCCACa-------CCAUA--------UGGCGCa------AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 202487 0.69 0.968419
Target:  5'- uGGUGacccagGGUcaGUugCGCGUcaucGGCACCa -3'
miRNA:   3'- cCCACa-----CCA--UAugGCGCAau--CCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 115569 0.7 0.962016
Target:  5'- gGGGUgGUGGUGcUGCUGCuGUugUGGGUGCg -3'
miRNA:   3'- -CCCA-CACCAU-AUGGCG-CA--AUCCGUGg -5'
29942 5' -52.3 NC_006273.1 + 113007 0.7 0.958498
Target:  5'- gGGGUGUGGUG-ACgGUG--GGGCuuuGCCu -3'
miRNA:   3'- -CCCACACCAUaUGgCGCaaUCCG---UGG- -5'
29942 5' -52.3 NC_006273.1 + 165810 0.7 0.958498
Target:  5'- -cGUGUGGcucugAUGCUGCGUgAGGUaggGCCg -3'
miRNA:   3'- ccCACACCa----UAUGGCGCAaUCCG---UGG- -5'
29942 5' -52.3 NC_006273.1 + 12305 0.7 0.954763
Target:  5'- -cGUGUGGUGUuuagACCGCGauugcgGGGUGCUu -3'
miRNA:   3'- ccCACACCAUA----UGGCGCaa----UCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 57455 0.7 0.953599
Target:  5'- cGGGUGUGGcUGUcuguuugucugugcGCCGUGgugcUGGGUcaguGCCa -3'
miRNA:   3'- -CCCACACC-AUA--------------UGGCGCa---AUCCG----UGG- -5'
29942 5' -52.3 NC_006273.1 + 138 0.7 0.950806
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5'
29942 5' -52.3 NC_006273.1 + 169682 0.7 0.950806
Target:  5'- ---cGUGGccguUGCCGCGUUA-GCGCCg -3'
miRNA:   3'- cccaCACCau--AUGGCGCAAUcCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 234969 0.7 0.950806
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5'
29942 5' -52.3 NC_006273.1 + 195031 0.7 0.950806
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5'
29942 5' -52.3 NC_006273.1 + 196510 0.7 0.950806
Target:  5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3'
miRNA:   3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 1617 0.7 0.950806
Target:  5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3'
miRNA:   3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 101174 0.7 0.946625
Target:  5'- cGGGcGUGGcg-GCCGU---AGGCGCCu -3'
miRNA:   3'- -CCCaCACCauaUGGCGcaaUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.