Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 72 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 138 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 183 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 1479 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 1617 | 0.7 | 0.950806 |
Target: 5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3' miRNA: 3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 12305 | 0.7 | 0.954763 |
Target: 5'- -cGUGUGGUGUuuagACCGCGauugcgGGGUGCUu -3' miRNA: 3'- ccCACACCAUA----UGGCGCaa----UCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 34028 | 0.66 | 0.995956 |
Target: 5'- cGGGaaugGUGGgacgccACCGCGgaGGGCGa- -3' miRNA: 3'- -CCCa---CACCaua---UGGCGCaaUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 36824 | 0.66 | 0.995305 |
Target: 5'- -cGUGUGGUGUaACUGCGgagacuGGCAg- -3' miRNA: 3'- ccCACACCAUA-UGGCGCaau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 41274 | 0.69 | 0.978854 |
Target: 5'- gGGGUGguggacacGGUGUuuugagaaGCCGUGgaagucgUAGGCAUCc -3' miRNA: 3'- -CCCACa-------CCAUA--------UGGCGCa------AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 43137 | 1.16 | 0.004247 |
Target: 5'- cGGGUGUGGUAUACCGCGUUAGGCACCg -3' miRNA: 3'- -CCCACACCAUAUGGCGCAAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 45830 | 0.67 | 0.9894 |
Target: 5'- uGGUGUGGcUGUGgcuCgGCGUcGGGCuCCu -3' miRNA: 3'- cCCACACC-AUAU---GgCGCAaUCCGuGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 46958 | 0.66 | 0.994571 |
Target: 5'- cGGGUGUGGUGgcugagugacGCCGgCGUaagAGaaACCg -3' miRNA: 3'- -CCCACACCAUa---------UGGC-GCAa--UCcgUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 48572 | 0.68 | 0.984814 |
Target: 5'- gGGGUGagGGgcggcAUGCCGUuggcGGCGCCg -3' miRNA: 3'- -CCCACa-CCa----UAUGGCGcaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 54950 | 0.66 | 0.996531 |
Target: 5'- cGGGUGguggcggcGGUGgcguggaaACCGuCGUcGGGCACa -3' miRNA: 3'- -CCCACa-------CCAUa-------UGGC-GCAaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 57455 | 0.7 | 0.953599 |
Target: 5'- cGGGUGUGGcUGUcuguuugucugugcGCCGUGgugcUGGGUcaguGCCa -3' miRNA: 3'- -CCCACACC-AUA--------------UGGCGCa---AUCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 80816 | 0.66 | 0.995956 |
Target: 5'- gGGGuUGuUGGUGgcaacgacgugGCCGCG--GGGCGCa -3' miRNA: 3'- -CCC-AC-ACCAUa----------UGGCGCaaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 83329 | 0.67 | 0.992826 |
Target: 5'- cGGGUggacccggcGUGGUGggACC-CGgc-GGCGCCg -3' miRNA: 3'- -CCCA---------CACCAUa-UGGcGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 89359 | 0.68 | 0.986485 |
Target: 5'- uGGGUGUGucggGCCGCGgcagucgcUUAGcCACCa -3' miRNA: 3'- -CCCACACcauaUGGCGC--------AAUCcGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 101174 | 0.7 | 0.946625 |
Target: 5'- cGGGcGUGGcg-GCCGU---AGGCGCCu -3' miRNA: 3'- -CCCaCACCauaUGGCGcaaUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 102387 | 0.67 | 0.99066 |
Target: 5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3' miRNA: 3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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