Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 108182 | 0.72 | 0.910902 |
Target: 5'- cGGcGUuucGGacGUACCGCGUUuGGGCGCCa -3' miRNA: 3'- cCCaCA---CCa-UAUGGCGCAA-UCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 113007 | 0.7 | 0.958498 |
Target: 5'- gGGGUGUGGUG-ACgGUG--GGGCuuuGCCu -3' miRNA: 3'- -CCCACACCAUaUGgCGCaaUCCG---UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 115569 | 0.7 | 0.962016 |
Target: 5'- gGGGUgGUGGUGcUGCUGCuGUugUGGGUGCg -3' miRNA: 3'- -CCCA-CACCAU-AUGGCG-CA--AUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 123912 | 0.66 | 0.995235 |
Target: 5'- aGGUGcaacuggaucagaUGGUagGUGCCGCGgu--GCACCc -3' miRNA: 3'- cCCAC-------------ACCA--UAUGGCGCaaucCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 137723 | 0.66 | 0.995832 |
Target: 5'- aGGUGUGGUGUcgauGgUGCGUUuuuuuuugccucGGCACg -3' miRNA: 3'- cCCACACCAUA----UgGCGCAAu-----------CCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 141043 | 0.68 | 0.984814 |
Target: 5'- aGGGcgGUGGgacgGgcCCGCGgacggaccGGCGCCg -3' miRNA: 3'- -CCCa-CACCa---UauGGCGCaau-----CCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 149476 | 0.66 | 0.994571 |
Target: 5'- gGGGUGgugGGUGguuUCGCGgcGGGaCAUUg -3' miRNA: 3'- -CCCACa--CCAUau-GGCGCaaUCC-GUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 152832 | 0.66 | 0.995956 |
Target: 5'- aGGGUcUGGacgACCucaugaGCGgccUGGGCGCCg -3' miRNA: 3'- -CCCAcACCauaUGG------CGCa--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 164225 | 0.67 | 0.99066 |
Target: 5'- cGG-GUGGUGUugCGCGgcgacGGGUGgCa -3' miRNA: 3'- cCCaCACCAUAugGCGCaa---UCCGUgG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 165810 | 0.7 | 0.958498 |
Target: 5'- -cGUGUGGcucugAUGCUGCGUgAGGUaggGCCg -3' miRNA: 3'- ccCACACCa----UAUGGCGCAaUCCG---UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 169682 | 0.7 | 0.950806 |
Target: 5'- ---cGUGGccguUGCCGCGUUA-GCGCCg -3' miRNA: 3'- cccaCACCau--AUGGCGCAAUcCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 177091 | 0.66 | 0.997037 |
Target: 5'- uGGUuUGGUuccgACCGCuc-AGGUACCa -3' miRNA: 3'- cCCAcACCAua--UGGCGcaaUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 177163 | 0.66 | 0.995305 |
Target: 5'- -aGUGUGGgcu-UCGCGc--GGCACCg -3' miRNA: 3'- ccCACACCauauGGCGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 191479 | 0.72 | 0.904872 |
Target: 5'- aGGUGgagcGGUAcgacUGCCGCGcgUAGGUACg -3' miRNA: 3'- cCCACa---CCAU----AUGGCGCa-AUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 193577 | 0.76 | 0.733313 |
Target: 5'- uGGGaUGUGGcucuguuggaaGUGCCGCGUUGGGCGg- -3' miRNA: 3'- -CCC-ACACCa----------UAUGGCGCAAUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 194965 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195031 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195076 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196372 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196510 | 0.7 | 0.950806 |
Target: 5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3' miRNA: 3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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