Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29942 | 5' | -52.3 | NC_006273.1 | + | 194965 | 0.77 | 0.703935 |
Target: 5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3' miRNA: 3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195076 | 0.67 | 0.9918 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 149476 | 0.66 | 0.994571 |
Target: 5'- gGGGUGgugGGUGguuUCGCGgcGGGaCAUUg -3' miRNA: 3'- -CCCACa--CCAUau-GGCGCaaUCC-GUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 123912 | 0.66 | 0.995235 |
Target: 5'- aGGUGcaacuggaucagaUGGUagGUGCCGCGgu--GCACCc -3' miRNA: 3'- cCCAC-------------ACCA--UAUGGCGCaaucCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 219838 | 0.66 | 0.995305 |
Target: 5'- uGGUGUcguagcGGUGUAgcaccaaCGUGUUGGGguCCa -3' miRNA: 3'- cCCACA------CCAUAUg------GCGCAAUCCguGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 34028 | 0.66 | 0.995956 |
Target: 5'- cGGGaaugGUGGgacgccACCGCGgaGGGCGa- -3' miRNA: 3'- -CCCa---CACCaua---UGGCGCaaUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 54950 | 0.66 | 0.996531 |
Target: 5'- cGGGUGguggcggcGGUGgcguggaaACCGuCGUcGGGCACa -3' miRNA: 3'- -CCCACa-------CCAUa-------UGGC-GCAaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196372 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 177091 | 0.66 | 0.997037 |
Target: 5'- uGGUuUGGUuccgACCGCuc-AGGUACCa -3' miRNA: 3'- cCCAcACCAua--UGGCGcaaUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 164225 | 0.67 | 0.99066 |
Target: 5'- cGG-GUGGUGUugCGCGgcgacGGGUGgCa -3' miRNA: 3'- cCCaCACCAUAugGCGCaa---UCCGUgG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 102387 | 0.67 | 0.99066 |
Target: 5'- cGGGUGUucgcGGUAg---GCGUcGGGCACg -3' miRNA: 3'- -CCCACA----CCAUauggCGCAaUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 193577 | 0.76 | 0.733313 |
Target: 5'- uGGGaUGUGGcucuguuggaaGUGCCGCGUUGGGCGg- -3' miRNA: 3'- -CCC-ACACCa----------UAUGGCGCAAUCCGUgg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 213295 | 0.71 | 0.927605 |
Target: 5'- -aGUGUGGUcaaACCGUGgc-GGCACCc -3' miRNA: 3'- ccCACACCAua-UGGCGCaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 196510 | 0.7 | 0.950806 |
Target: 5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3' miRNA: 3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 195031 | 0.7 | 0.950806 |
Target: 5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3' miRNA: 3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 115569 | 0.7 | 0.962016 |
Target: 5'- gGGGUgGUGGUGcUGCUGCuGUugUGGGUGCg -3' miRNA: 3'- -CCCA-CACCAU-AUGGCG-CA--AUCCGUGg -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 41274 | 0.69 | 0.978854 |
Target: 5'- gGGGUGguggacacGGUGUuuugagaaGCCGUGgaagucgUAGGCAUCc -3' miRNA: 3'- -CCCACa-------CCAUA--------UGGCGCa------AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 217039 | 0.68 | 0.981006 |
Target: 5'- cGGUucgGUGGUGgcgaACgGCGUuugUGGGUGCCg -3' miRNA: 3'- cCCA---CACCAUa---UGgCGCA---AUCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 48572 | 0.68 | 0.984814 |
Target: 5'- gGGGUGagGGgcggcAUGCCGUuggcGGCGCCg -3' miRNA: 3'- -CCCACa-CCa----UAUGGCGcaauCCGUGG- -5' |
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29942 | 5' | -52.3 | NC_006273.1 | + | 1479 | 0.66 | 0.996531 |
Target: 5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3' miRNA: 3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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