miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29942 5' -52.3 NC_006273.1 + 234903 0.77 0.703935
Target:  5'- cGGGUGUgucagGGUGUGCCGCGggugugucgcGGGCguguGCCg -3'
miRNA:   3'- -CCCACA-----CCAUAUGGCGCaa--------UCCG----UGG- -5'
29942 5' -52.3 NC_006273.1 + 45830 0.67 0.9894
Target:  5'- uGGUGUGGcUGUGgcuCgGCGUcGGGCuCCu -3'
miRNA:   3'- cCCACACC-AUAU---GgCGCAaUCCGuGG- -5'
29942 5' -52.3 NC_006273.1 + 235014 0.67 0.9918
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 1479 0.66 0.996531
Target:  5'- aGGGUcuGUGcGcgcaggacggacUGUACCugGCGcUGGGCGCCg -3'
miRNA:   3'- -CCCA--CAC-C------------AUAUGG--CGCaAUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 1617 0.7 0.950806
Target:  5'- uGGUGcGGcUGUACCGCugcaaccggcugGgcgUGGGCACCc -3'
miRNA:   3'- cCCACaCC-AUAUGGCG------------Ca--AUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 169682 0.7 0.950806
Target:  5'- ---cGUGGccguUGCCGCGUUA-GCGCCg -3'
miRNA:   3'- cccaCACCau--AUGGCGCAAUcCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 234969 0.7 0.950806
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5'
29942 5' -52.3 NC_006273.1 + 57455 0.7 0.953599
Target:  5'- cGGGUGUGGcUGUcuguuugucugugcGCCGUGgugcUGGGUcaguGCCa -3'
miRNA:   3'- -CCCACACC-AUA--------------UGGCGCa---AUCCG----UGG- -5'
29942 5' -52.3 NC_006273.1 + 43137 1.16 0.004247
Target:  5'- cGGGUGUGGUAUACCGCGUUAGGCACCg -3'
miRNA:   3'- -CCCACACCAUAUGGCGCAAUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 89359 0.68 0.986485
Target:  5'- uGGGUGUGucggGCCGCGgcagucgcUUAGcCACCa -3'
miRNA:   3'- -CCCACACcauaUGGCGC--------AAUCcGUGG- -5'
29942 5' -52.3 NC_006273.1 + 165810 0.7 0.958498
Target:  5'- -cGUGUGGcucugAUGCUGCGUgAGGUaggGCCg -3'
miRNA:   3'- ccCACACCa----UAUGGCGCAaUCCG---UGG- -5'
29942 5' -52.3 NC_006273.1 + 113007 0.7 0.958498
Target:  5'- gGGGUGUGGUG-ACgGUG--GGGCuuuGCCu -3'
miRNA:   3'- -CCCACACCAUaUGgCGCaaUCCG---UGG- -5'
29942 5' -52.3 NC_006273.1 + 191479 0.72 0.904872
Target:  5'- aGGUGgagcGGUAcgacUGCCGCGcgUAGGUACg -3'
miRNA:   3'- cCCACa---CCAU----AUGGCGCa-AUCCGUGg -5'
29942 5' -52.3 NC_006273.1 + 202487 0.69 0.968419
Target:  5'- uGGUGacccagGGUcaGUugCGCGUcaucGGCACCa -3'
miRNA:   3'- cCCACa-----CCA--UAugGCGCAau--CCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 108182 0.72 0.910902
Target:  5'- cGGcGUuucGGacGUACCGCGUUuGGGCGCCa -3'
miRNA:   3'- cCCaCA---CCa-UAUGGCGCAA-UCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 12305 0.7 0.954763
Target:  5'- -cGUGUGGUGUuuagACCGCGauugcgGGGUGCUu -3'
miRNA:   3'- ccCACACCAUA----UGGCGCaa----UCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 141043 0.68 0.984814
Target:  5'- aGGGcgGUGGgacgGgcCCGCGgacggaccGGCGCCg -3'
miRNA:   3'- -CCCa-CACCa---UauGGCGCaau-----CCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 183 0.67 0.9918
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucGGCGg- -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAau---CCGUgg -5'
29942 5' -52.3 NC_006273.1 + 101174 0.7 0.946625
Target:  5'- cGGGcGUGGcg-GCCGU---AGGCGCCu -3'
miRNA:   3'- -CCCaCACCauaUGGCGcaaUCCGUGG- -5'
29942 5' -52.3 NC_006273.1 + 138 0.7 0.950806
Target:  5'- cGGGUGUGucgcgggcGUGUGCCGgGUgugucgGGGUguguugGCCg -3'
miRNA:   3'- -CCCACAC--------CAUAUGGCgCAa-----UCCG------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.