miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 79716 0.66 0.982153
Target:  5'- -gCCGUaGUCC-ACGGUggugCACACGUgCa -3'
miRNA:   3'- aaGGCAaCGGGuUGCCA----GUGUGCAgG- -5'
29943 3' -54.6 NC_006273.1 + 95539 0.66 0.982153
Target:  5'- -aCCGUcccaCCCGGCGuGUCGacuCGUCCg -3'
miRNA:   3'- aaGGCAac--GGGUUGC-CAGUgu-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 187351 0.66 0.982153
Target:  5'- -gCCGUcaccgccaUGUCCGGCGGagGCACG-CUg -3'
miRNA:   3'- aaGGCA--------ACGGGUUGCCagUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 112533 0.66 0.981957
Target:  5'- -aCCGUcagggacucaaaaUGCCCGuuACGGUCugGCuaCCg -3'
miRNA:   3'- aaGGCA-------------ACGGGU--UGCCAGugUGcaGG- -5'
29943 3' -54.6 NC_006273.1 + 180417 0.66 0.980113
Target:  5'- gUCUG-UGCCCGacgACGGUUucCACG-CCa -3'
miRNA:   3'- aAGGCaACGGGU---UGCCAGu-GUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 219474 0.66 0.980113
Target:  5'- cUCCGUcuuCCCAGCGuGUacgcCACAUGUCa -3'
miRNA:   3'- aAGGCAac-GGGUUGC-CA----GUGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 112535 0.66 0.980113
Target:  5'- -cCCGUcgccGCCCcgucugacGCGGUCGcCGCGUCa -3'
miRNA:   3'- aaGGCAa---CGGGu-------UGCCAGU-GUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 52649 0.66 0.980113
Target:  5'- -cUCGgcGUCCAugGGguUCACcucggGCGUCCg -3'
miRNA:   3'- aaGGCaaCGGGUugCC--AGUG-----UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 145655 0.66 0.978808
Target:  5'- aUUCCGggggaaugaugggGCgCGGCGGUCGCAUG-CUg -3'
miRNA:   3'- -AAGGCaa-----------CGgGUUGCCAGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 211312 0.66 0.978808
Target:  5'- --gUGUUGCCCGucaaaaauccccacaACGGUCA-ACGUCa -3'
miRNA:   3'- aagGCAACGGGU---------------UGCCAGUgUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 177556 0.66 0.977903
Target:  5'- gUUgGUgccGCCgCGACGGuUCugACGUCUa -3'
miRNA:   3'- aAGgCAa--CGG-GUUGCC-AGugUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 217891 0.66 0.977903
Target:  5'- -gCCGUUGCUCAAaccauucGUC-UACGUCCu -3'
miRNA:   3'- aaGGCAACGGGUUgc-----CAGuGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 233886 0.66 0.975518
Target:  5'- -cCCGgcGCCCAGCGccaggUACAgucCGUCCu -3'
miRNA:   3'- aaGGCaaCGGGUUGCca---GUGU---GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 38993 0.66 0.975518
Target:  5'- -cCCGgcGCCCAGCGccaggUACAgucCGUCCu -3'
miRNA:   3'- aaGGCaaCGGGUUGCca---GUGU---GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 168965 0.66 0.975518
Target:  5'- -gCUGcgUGCUCAGaCGGUC-CAgGUCCa -3'
miRNA:   3'- aaGGCa-ACGGGUU-GCCAGuGUgCAGG- -5'
29943 3' -54.6 NC_006273.1 + 63203 0.66 0.972949
Target:  5'- -gCCuUUGCCUccgcuuGACGGcgUCACACGcUCCg -3'
miRNA:   3'- aaGGcAACGGG------UUGCC--AGUGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 195664 0.66 0.972949
Target:  5'- -aCCGUcUGCC--GCGGUUGCAC-UCCg -3'
miRNA:   3'- aaGGCA-ACGGguUGCCAGUGUGcAGG- -5'
29943 3' -54.6 NC_006273.1 + 157159 0.67 0.970191
Target:  5'- aUUCGUgGCCUGA-GGUCAUcguCGUCCa -3'
miRNA:   3'- aAGGCAaCGGGUUgCCAGUGu--GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 52310 0.67 0.968443
Target:  5'- -aCC-UUGCCCAACGccgacgccuggaucaGUCccccCACGUCCa -3'
miRNA:   3'- aaGGcAACGGGUUGC---------------CAGu---GUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 187554 0.67 0.967238
Target:  5'- -gCCGagGCCCAGCGacgACAgGUCCg -3'
miRNA:   3'- aaGGCaaCGGGUUGCcagUGUgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.