miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 42839 1.1 0.005188
Target:  5'- gUUCCGUUGCCCAACGGUCACACGUCCg -3'
miRNA:   3'- -AAGGCAACGGGUUGCCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 28947 0.76 0.552404
Target:  5'- --gCGUUGCCCGgguuuccACGGUCGCgACGUCUu -3'
miRNA:   3'- aagGCAACGGGU-------UGCCAGUG-UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 45493 0.76 0.567173
Target:  5'- -aCCGUcgcagccgacggcgaUGCCCGGCGGUCcgcccgACGCGUCUc -3'
miRNA:   3'- aaGGCA---------------ACGGGUUGCCAG------UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 163433 0.74 0.683007
Target:  5'- --gCGUUGgcccCCCAGCaGUCGCAUGUCCg -3'
miRNA:   3'- aagGCAAC----GGGUUGcCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 214141 0.73 0.712572
Target:  5'- -cCCGUUGUCCAAaGG-CGCGcCGUCCg -3'
miRNA:   3'- aaGGCAACGGGUUgCCaGUGU-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 201977 0.73 0.712572
Target:  5'- -gCCGacGCCCGagGCGGU-GCGCGUCCa -3'
miRNA:   3'- aaGGCaaCGGGU--UGCCAgUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 62123 0.73 0.75103
Target:  5'- gUUCCGggGgCCAGCaGcCGCugGUCCg -3'
miRNA:   3'- -AAGGCaaCgGGUUGcCaGUGugCAGG- -5'
29943 3' -54.6 NC_006273.1 + 147597 0.73 0.760415
Target:  5'- -gCCGcgGCUCAcgacGCGGUUugaGCACGUCCg -3'
miRNA:   3'- aaGGCaaCGGGU----UGCCAG---UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 68117 0.72 0.787881
Target:  5'- -cCCGUcaUGCCCGccaccgccACGGUCAcCACG-CCg -3'
miRNA:   3'- aaGGCA--ACGGGU--------UGCCAGU-GUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 212680 0.72 0.805534
Target:  5'- -gCCGgcGCCUGACGGUCcuuuguGCGCGcUCCc -3'
miRNA:   3'- aaGGCaaCGGGUUGCCAG------UGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 92610 0.71 0.830862
Target:  5'- -gCUGUUGCucgCCAGCGG-CGCGCGUgCg -3'
miRNA:   3'- aaGGCAACG---GGUUGCCaGUGUGCAgG- -5'
29943 3' -54.6 NC_006273.1 + 174975 0.71 0.830862
Target:  5'- -gCCGcUGCCCGGgGGUgACaaggaaGCGUCCg -3'
miRNA:   3'- aaGGCaACGGGUUgCCAgUG------UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 190600 0.71 0.854631
Target:  5'- -gCCGgcGCCCAuCGGcCGCGCGaucUCCu -3'
miRNA:   3'- aaGGCaaCGGGUuGCCaGUGUGC---AGG- -5'
29943 3' -54.6 NC_006273.1 + 8714 0.7 0.862175
Target:  5'- -aCCGU--CCCAACGGUCGUACGuggUCCg -3'
miRNA:   3'- aaGGCAacGGGUUGCCAGUGUGC---AGG- -5'
29943 3' -54.6 NC_006273.1 + 37977 0.7 0.86952
Target:  5'- cUCCcacUGCCCGuGCGGcUCGCGCGcCCa -3'
miRNA:   3'- aAGGca-ACGGGU-UGCC-AGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 218488 0.7 0.86952
Target:  5'- cUCCGUUGCguuCCAGCcuGGcCGCGCG-CCg -3'
miRNA:   3'- aAGGCAACG---GGUUG--CCaGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 128375 0.7 0.883592
Target:  5'- -aCCGUUuuuucGCCCAGuCGGau-CACGUCCa -3'
miRNA:   3'- aaGGCAA-----CGGGUU-GCCaguGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 143993 0.7 0.890309
Target:  5'- cUUCCGUaaucUGCCCuuuACGGUgcUGCGUCUg -3'
miRNA:   3'- -AAGGCA----ACGGGu--UGCCAguGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 175092 0.69 0.896808
Target:  5'- -gCCGUcuCCCGACGG-CACGcCGUCUg -3'
miRNA:   3'- aaGGCAacGGGUUGCCaGUGU-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 230290 0.69 0.903086
Target:  5'- uUUCCGUuuuacgUGCC--GCGGUCcuaGCACGUCa -3'
miRNA:   3'- -AAGGCA------ACGGguUGCCAG---UGUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.