miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 206682 0.67 0.964083
Target:  5'- --gCGgUGCgCAGCaGGUCGC-CGUCCg -3'
miRNA:   3'- aagGCaACGgGUUG-CCAGUGuGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 91029 0.67 0.964083
Target:  5'- -gCCGUUGCCCAccaccACGuG-CACAguCGUCUc -3'
miRNA:   3'- aaGGCAACGGGU-----UGC-CaGUGU--GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 45249 0.67 0.964083
Target:  5'- -cCCGUgccGCCCGGCGGcugCuCGCG-CCg -3'
miRNA:   3'- aaGGCAa--CGGGUUGCCa--GuGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 149421 0.67 0.95715
Target:  5'- gUCCGcUGCCCGAUGG-CACGgGg-- -3'
miRNA:   3'- aAGGCaACGGGUUGCCaGUGUgCagg -5'
29943 3' -54.6 NC_006273.1 + 129589 0.67 0.95715
Target:  5'- cUCCGcuaUGCCgCGcCGGguuUUACACGUCCc -3'
miRNA:   3'- aAGGCa--ACGG-GUuGCC---AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 178630 0.67 0.95715
Target:  5'- ------aGCCCAugGGUCugGCGgUCUg -3'
miRNA:   3'- aaggcaaCGGGUugCCAGugUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 72463 0.67 0.953362
Target:  5'- -aCCGUcgGUgCCGGCGG-C-CACGUCCg -3'
miRNA:   3'- aaGGCAa-CG-GGUUGCCaGuGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 123097 0.67 0.953362
Target:  5'- -gCUGgcGCCUcgguGCGGUCGCAgGUCa -3'
miRNA:   3'- aaGGCaaCGGGu---UGCCAGUGUgCAGg -5'
29943 3' -54.6 NC_006273.1 + 23516 0.67 0.953362
Target:  5'- -gCCGUUGCCaCGagcAUGGaUCACGCGcUCUu -3'
miRNA:   3'- aaGGCAACGG-GU---UGCC-AGUGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 123119 0.68 0.949354
Target:  5'- -aCCGuUUGCgCAccCGGUCcaugaGCACGUCCu -3'
miRNA:   3'- aaGGC-AACGgGUu-GCCAG-----UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 19641 0.68 0.945124
Target:  5'- -gCUGUggGCCCAcuGCGGUCGCuucuuGCGUUa -3'
miRNA:   3'- aaGGCAa-CGGGU--UGCCAGUG-----UGCAGg -5'
29943 3' -54.6 NC_006273.1 + 19959 0.68 0.945124
Target:  5'- -aCCGUUGCuuaCCAGCGuggcuGUCACgGCGUCa -3'
miRNA:   3'- aaGGCAACG---GGUUGC-----CAGUG-UGCAGg -5'
29943 3' -54.6 NC_006273.1 + 147819 0.68 0.935987
Target:  5'- -gCCG-UGCCgAgccGCGGcuUCACACGUUCg -3'
miRNA:   3'- aaGGCaACGGgU---UGCC--AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 36495 0.68 0.935987
Target:  5'- uUUCCGUguUGCCgaCGGCGG-CGCG-GUCCg -3'
miRNA:   3'- -AAGGCA--ACGG--GUUGCCaGUGUgCAGG- -5'
29943 3' -54.6 NC_006273.1 + 29016 0.68 0.935987
Target:  5'- gUCC-UUGauuaCCGacaucGCGGUCGCGCGUCg -3'
miRNA:   3'- aAGGcAACg---GGU-----UGCCAGUGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 74590 0.68 0.931076
Target:  5'- aUCCGccGCCCAACu---GCGCGUCCc -3'
miRNA:   3'- aAGGCaaCGGGUUGccagUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 148595 0.68 0.931076
Target:  5'- -cCCG-UGCCCGucuacGCGGUC-CACGgUCUg -3'
miRNA:   3'- aaGGCaACGGGU-----UGCCAGuGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 198102 0.68 0.931076
Target:  5'- -gCCGUcgcaagggcUGCUCGGCGGcCACgGCGUCUu -3'
miRNA:   3'- aaGGCA---------ACGGGUUGCCaGUG-UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 29608 0.68 0.931076
Target:  5'- gUUCCGUU-CCCGGCGGg--UACGUCa -3'
miRNA:   3'- -AAGGCAAcGGGUUGCCaguGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 105246 0.68 0.931076
Target:  5'- -cCCGagGaaaCGGgGGUCACGCGUCCu -3'
miRNA:   3'- aaGGCaaCgg-GUUgCCAGUGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.