miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 8714 0.7 0.862175
Target:  5'- -aCCGU--CCCAACGGUCGUACGuggUCCg -3'
miRNA:   3'- aaGGCAacGGGUUGCCAGUGUGC---AGG- -5'
29943 3' -54.6 NC_006273.1 + 19641 0.68 0.945124
Target:  5'- -gCUGUggGCCCAcuGCGGUCGCuucuuGCGUUa -3'
miRNA:   3'- aaGGCAa-CGGGU--UGCCAGUG-----UGCAGg -5'
29943 3' -54.6 NC_006273.1 + 19959 0.68 0.945124
Target:  5'- -aCCGUUGCuuaCCAGCGuggcuGUCACgGCGUCa -3'
miRNA:   3'- aaGGCAACG---GGUUGC-----CAGUG-UGCAGg -5'
29943 3' -54.6 NC_006273.1 + 23516 0.67 0.953362
Target:  5'- -gCCGUUGCCaCGagcAUGGaUCACGCGcUCUu -3'
miRNA:   3'- aaGGCAACGG-GU---UGCC-AGUGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 28947 0.76 0.552404
Target:  5'- --gCGUUGCCCGgguuuccACGGUCGCgACGUCUu -3'
miRNA:   3'- aagGCAACGGGU-------UGCCAGUG-UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 29016 0.68 0.935987
Target:  5'- gUCC-UUGauuaCCGacaucGCGGUCGCGCGUCg -3'
miRNA:   3'- aAGGcAACg---GGU-----UGCCAGUGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 29608 0.68 0.931076
Target:  5'- gUUCCGUU-CCCGGCGGg--UACGUCa -3'
miRNA:   3'- -AAGGCAAcGGGUUGCCaguGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 36495 0.68 0.935987
Target:  5'- uUUCCGUguUGCCgaCGGCGG-CGCG-GUCCg -3'
miRNA:   3'- -AAGGCA--ACGG--GUUGCCaGUGUgCAGG- -5'
29943 3' -54.6 NC_006273.1 + 37977 0.7 0.86952
Target:  5'- cUCCcacUGCCCGuGCGGcUCGCGCGcCCa -3'
miRNA:   3'- aAGGca-ACGGGU-UGCC-AGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 38993 0.66 0.975518
Target:  5'- -cCCGgcGCCCAGCGccaggUACAgucCGUCCu -3'
miRNA:   3'- aaGGCaaCGGGUUGCca---GUGU---GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 42839 1.1 0.005188
Target:  5'- gUUCCGUUGCCCAACGGUCACACGUCCg -3'
miRNA:   3'- -AAGGCAACGGGUUGCCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 45249 0.67 0.964083
Target:  5'- -cCCGUgccGCCCGGCGGcugCuCGCG-CCg -3'
miRNA:   3'- aaGGCAa--CGGGUUGCCa--GuGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 45493 0.76 0.567173
Target:  5'- -aCCGUcgcagccgacggcgaUGCCCGGCGGUCcgcccgACGCGUCUc -3'
miRNA:   3'- aaGGCA---------------ACGGGUUGCCAG------UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 52310 0.67 0.968443
Target:  5'- -aCC-UUGCCCAACGccgacgccuggaucaGUCccccCACGUCCa -3'
miRNA:   3'- aaGGcAACGGGUUGC---------------CAGu---GUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 52649 0.66 0.980113
Target:  5'- -cUCGgcGUCCAugGGguUCACcucggGCGUCCg -3'
miRNA:   3'- aaGGCaaCGGGUugCC--AGUG-----UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 62123 0.73 0.75103
Target:  5'- gUUCCGggGgCCAGCaGcCGCugGUCCg -3'
miRNA:   3'- -AAGGCaaCgGGUUGcCaGUGugCAGG- -5'
29943 3' -54.6 NC_006273.1 + 63203 0.66 0.972949
Target:  5'- -gCCuUUGCCUccgcuuGACGGcgUCACACGcUCCg -3'
miRNA:   3'- aaGGcAACGGG------UUGCC--AGUGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 68117 0.72 0.787881
Target:  5'- -cCCGUcaUGCCCGccaccgccACGGUCAcCACG-CCg -3'
miRNA:   3'- aaGGCA--ACGGGU--------UGCCAGU-GUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 72463 0.67 0.953362
Target:  5'- -aCCGUcgGUgCCGGCGG-C-CACGUCCg -3'
miRNA:   3'- aaGGCAa-CG-GGUUGCCaGuGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 74590 0.68 0.931076
Target:  5'- aUCCGccGCCCAACu---GCGCGUCCc -3'
miRNA:   3'- aAGGCaaCGGGUUGccagUGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.