miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 79716 0.66 0.982153
Target:  5'- -gCCGUaGUCC-ACGGUggugCACACGUgCa -3'
miRNA:   3'- aaGGCAaCGGGuUGCCA----GUGUGCAgG- -5'
29943 3' -54.6 NC_006273.1 + 91029 0.67 0.964083
Target:  5'- -gCCGUUGCCCAccaccACGuG-CACAguCGUCUc -3'
miRNA:   3'- aaGGCAACGGGU-----UGC-CaGUGU--GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 92610 0.71 0.830862
Target:  5'- -gCUGUUGCucgCCAGCGG-CGCGCGUgCg -3'
miRNA:   3'- aaGGCAACG---GGUUGCCaGUGUGCAgG- -5'
29943 3' -54.6 NC_006273.1 + 95539 0.66 0.982153
Target:  5'- -aCCGUcccaCCCGGCGuGUCGacuCGUCCg -3'
miRNA:   3'- aaGGCAac--GGGUUGC-CAGUgu-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 105246 0.68 0.931076
Target:  5'- -cCCGagGaaaCGGgGGUCACGCGUCCu -3'
miRNA:   3'- aaGGCaaCgg-GUUgCCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 105464 0.69 0.920565
Target:  5'- ------cGCCCGGCGGUCACGgaUCCg -3'
miRNA:   3'- aaggcaaCGGGUUGCCAGUGUgcAGG- -5'
29943 3' -54.6 NC_006273.1 + 112533 0.66 0.981957
Target:  5'- -aCCGUcagggacucaaaaUGCCCGuuACGGUCugGCuaCCg -3'
miRNA:   3'- aaGGCA-------------ACGGGU--UGCCAGugUGcaGG- -5'
29943 3' -54.6 NC_006273.1 + 112535 0.66 0.980113
Target:  5'- -cCCGUcgccGCCCcgucugacGCGGUCGcCGCGUCa -3'
miRNA:   3'- aaGGCAa---CGGGu-------UGCCAGU-GUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 123097 0.67 0.953362
Target:  5'- -gCUGgcGCCUcgguGCGGUCGCAgGUCa -3'
miRNA:   3'- aaGGCaaCGGGu---UGCCAGUGUgCAGg -5'
29943 3' -54.6 NC_006273.1 + 123119 0.68 0.949354
Target:  5'- -aCCGuUUGCgCAccCGGUCcaugaGCACGUCCu -3'
miRNA:   3'- aaGGC-AACGgGUu-GCCAG-----UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 128375 0.7 0.883592
Target:  5'- -aCCGUUuuuucGCCCAGuCGGau-CACGUCCa -3'
miRNA:   3'- aaGGCAA-----CGGGUU-GCCaguGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 129589 0.67 0.95715
Target:  5'- cUCCGcuaUGCCgCGcCGGguuUUACACGUCCc -3'
miRNA:   3'- aAGGCa--ACGG-GUuGCC---AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 143993 0.7 0.890309
Target:  5'- cUUCCGUaaucUGCCCuuuACGGUgcUGCGUCUg -3'
miRNA:   3'- -AAGGCA----ACGGGu--UGCCAguGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 145655 0.66 0.978808
Target:  5'- aUUCCGggggaaugaugggGCgCGGCGGUCGCAUG-CUg -3'
miRNA:   3'- -AAGGCaa-----------CGgGUUGCCAGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 147597 0.73 0.760415
Target:  5'- -gCCGcgGCUCAcgacGCGGUUugaGCACGUCCg -3'
miRNA:   3'- aaGGCaaCGGGU----UGCCAG---UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 147819 0.68 0.935987
Target:  5'- -gCCG-UGCCgAgccGCGGcuUCACACGUUCg -3'
miRNA:   3'- aaGGCaACGGgU---UGCC--AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 148595 0.68 0.931076
Target:  5'- -cCCG-UGCCCGucuacGCGGUC-CACGgUCUg -3'
miRNA:   3'- aaGGCaACGGGU-----UGCCAGuGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 149421 0.67 0.95715
Target:  5'- gUCCGcUGCCCGAUGG-CACGgGg-- -3'
miRNA:   3'- aAGGCaACGGGUUGCCaGUGUgCagg -5'
29943 3' -54.6 NC_006273.1 + 157159 0.67 0.970191
Target:  5'- aUUCGUgGCCUGA-GGUCAUcguCGUCCa -3'
miRNA:   3'- aAGGCAaCGGGUUgCCAGUGu--GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 163433 0.74 0.683007
Target:  5'- --gCGUUGgcccCCCAGCaGUCGCAUGUCCg -3'
miRNA:   3'- aagGCAAC----GGGUUGcCAGUGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.