miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 233886 0.66 0.975518
Target:  5'- -cCCGgcGCCCAGCGccaggUACAgucCGUCCu -3'
miRNA:   3'- aaGGCaaCGGGUUGCca---GUGU---GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 230290 0.69 0.903086
Target:  5'- uUUCCGUuuuacgUGCC--GCGGUCcuaGCACGUCa -3'
miRNA:   3'- -AAGGCA------ACGGguUGCCAG---UGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 219474 0.66 0.980113
Target:  5'- cUCCGUcuuCCCAGCGuGUacgcCACAUGUCa -3'
miRNA:   3'- aAGGCAac-GGGUUGC-CA----GUGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 218488 0.7 0.86952
Target:  5'- cUCCGUUGCguuCCAGCcuGGcCGCGCG-CCg -3'
miRNA:   3'- aAGGCAACG---GGUUG--CCaGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 217891 0.66 0.977903
Target:  5'- -gCCGUUGCUCAAaccauucGUC-UACGUCCu -3'
miRNA:   3'- aaGGCAACGGGUUgc-----CAGuGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 214141 0.73 0.712572
Target:  5'- -cCCGUUGUCCAAaGG-CGCGcCGUCCg -3'
miRNA:   3'- aaGGCAACGGGUUgCCaGUGU-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 212680 0.72 0.805534
Target:  5'- -gCCGgcGCCUGACGGUCcuuuguGCGCGcUCCc -3'
miRNA:   3'- aaGGCaaCGGGUUGCCAG------UGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 211312 0.66 0.978808
Target:  5'- --gUGUUGCCCGucaaaaauccccacaACGGUCA-ACGUCa -3'
miRNA:   3'- aagGCAACGGGU---------------UGCCAGUgUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 206682 0.67 0.964083
Target:  5'- --gCGgUGCgCAGCaGGUCGC-CGUCCg -3'
miRNA:   3'- aagGCaACGgGUUG-CCAGUGuGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 201977 0.73 0.712572
Target:  5'- -gCCGacGCCCGagGCGGU-GCGCGUCCa -3'
miRNA:   3'- aaGGCaaCGGGU--UGCCAgUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 198102 0.68 0.931076
Target:  5'- -gCCGUcgcaagggcUGCUCGGCGGcCACgGCGUCUu -3'
miRNA:   3'- aaGGCA---------ACGGGUUGCCaGUG-UGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 195664 0.66 0.972949
Target:  5'- -aCCGUcUGCC--GCGGUUGCAC-UCCg -3'
miRNA:   3'- aaGGCA-ACGGguUGCCAGUGUGcAGG- -5'
29943 3' -54.6 NC_006273.1 + 190600 0.71 0.854631
Target:  5'- -gCCGgcGCCCAuCGGcCGCGCGaucUCCu -3'
miRNA:   3'- aaGGCaaCGGGUuGCCaGUGUGC---AGG- -5'
29943 3' -54.6 NC_006273.1 + 187554 0.67 0.967238
Target:  5'- -gCCGagGCCCAGCGacgACAgGUCCg -3'
miRNA:   3'- aaGGCaaCGGGUUGCcagUGUgCAGG- -5'
29943 3' -54.6 NC_006273.1 + 187351 0.66 0.982153
Target:  5'- -gCCGUcaccgccaUGUCCGGCGGagGCACG-CUg -3'
miRNA:   3'- aaGGCA--------ACGGGUUGCCagUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 180417 0.66 0.980113
Target:  5'- gUCUG-UGCCCGacgACGGUUucCACG-CCa -3'
miRNA:   3'- aAGGCaACGGGU---UGCCAGu-GUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 178630 0.67 0.95715
Target:  5'- ------aGCCCAugGGUCugGCGgUCUg -3'
miRNA:   3'- aaggcaaCGGGUugCCAGugUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 177556 0.66 0.977903
Target:  5'- gUUgGUgccGCCgCGACGGuUCugACGUCUa -3'
miRNA:   3'- aAGgCAa--CGG-GUUGCC-AGugUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 175092 0.69 0.896808
Target:  5'- -gCCGUcuCCCGACGG-CACGcCGUCUg -3'
miRNA:   3'- aaGGCAacGGGUUGCCaGUGU-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 174975 0.71 0.830862
Target:  5'- -gCCGcUGCCCGGgGGUgACaaggaaGCGUCCg -3'
miRNA:   3'- aaGGCaACGGGUUgCCAgUG------UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.