miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 3' -54.6 NC_006273.1 + 206682 0.67 0.964083
Target:  5'- --gCGgUGCgCAGCaGGUCGC-CGUCCg -3'
miRNA:   3'- aagGCaACGgGUUG-CCAGUGuGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 148595 0.68 0.931076
Target:  5'- -cCCG-UGCCCGucuacGCGGUC-CACGgUCUg -3'
miRNA:   3'- aaGGCaACGGGU-----UGCCAGuGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 147819 0.68 0.935987
Target:  5'- -gCCG-UGCCgAgccGCGGcuUCACACGUUCg -3'
miRNA:   3'- aaGGCaACGGgU---UGCC--AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 29016 0.68 0.935987
Target:  5'- gUCC-UUGauuaCCGacaucGCGGUCGCGCGUCg -3'
miRNA:   3'- aAGGcAACg---GGU-----UGCCAGUGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 19641 0.68 0.945124
Target:  5'- -gCUGUggGCCCAcuGCGGUCGCuucuuGCGUUa -3'
miRNA:   3'- aaGGCAa-CGGGU--UGCCAGUG-----UGCAGg -5'
29943 3' -54.6 NC_006273.1 + 123097 0.67 0.953362
Target:  5'- -gCUGgcGCCUcgguGCGGUCGCAgGUCa -3'
miRNA:   3'- aaGGCaaCGGGu---UGCCAGUGUgCAGg -5'
29943 3' -54.6 NC_006273.1 + 23516 0.67 0.953362
Target:  5'- -gCCGUUGCCaCGagcAUGGaUCACGCGcUCUu -3'
miRNA:   3'- aaGGCAACGG-GU---UGCC-AGUGUGC-AGG- -5'
29943 3' -54.6 NC_006273.1 + 129589 0.67 0.95715
Target:  5'- cUCCGcuaUGCCgCGcCGGguuUUACACGUCCc -3'
miRNA:   3'- aAGGCa--ACGG-GUuGCC---AGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 91029 0.67 0.964083
Target:  5'- -gCCGUUGCCCAccaccACGuG-CACAguCGUCUc -3'
miRNA:   3'- aaGGCAACGGGU-----UGC-CaGUGU--GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 105246 0.68 0.931076
Target:  5'- -cCCGagGaaaCGGgGGUCACGCGUCCu -3'
miRNA:   3'- aaGGCaaCgg-GUUgCCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 29608 0.68 0.931076
Target:  5'- gUUCCGUU-CCCGGCGGg--UACGUCa -3'
miRNA:   3'- -AAGGCAAcGGGUUGCCaguGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 230290 0.69 0.903086
Target:  5'- uUUCCGUuuuacgUGCC--GCGGUCcuaGCACGUCa -3'
miRNA:   3'- -AAGGCA------ACGGguUGCCAG---UGUGCAGg -5'
29943 3' -54.6 NC_006273.1 + 163433 0.74 0.683007
Target:  5'- --gCGUUGgcccCCCAGCaGUCGCAUGUCCg -3'
miRNA:   3'- aagGCAAC----GGGUUGcCAGUGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 214141 0.73 0.712572
Target:  5'- -cCCGUUGUCCAAaGG-CGCGcCGUCCg -3'
miRNA:   3'- aaGGCAACGGGUUgCCaGUGU-GCAGG- -5'
29943 3' -54.6 NC_006273.1 + 62123 0.73 0.75103
Target:  5'- gUUCCGggGgCCAGCaGcCGCugGUCCg -3'
miRNA:   3'- -AAGGCaaCgGGUUGcCaGUGugCAGG- -5'
29943 3' -54.6 NC_006273.1 + 147597 0.73 0.760415
Target:  5'- -gCCGcgGCUCAcgacGCGGUUugaGCACGUCCg -3'
miRNA:   3'- aaGGCaaCGGGU----UGCCAG---UGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 190600 0.71 0.854631
Target:  5'- -gCCGgcGCCCAuCGGcCGCGCGaucUCCu -3'
miRNA:   3'- aaGGCaaCGGGUuGCCaGUGUGC---AGG- -5'
29943 3' -54.6 NC_006273.1 + 218488 0.7 0.86952
Target:  5'- cUCCGUUGCguuCCAGCcuGGcCGCGCG-CCg -3'
miRNA:   3'- aAGGCAACG---GGUUG--CCaGUGUGCaGG- -5'
29943 3' -54.6 NC_006273.1 + 128375 0.7 0.883592
Target:  5'- -aCCGUUuuuucGCCCAGuCGGau-CACGUCCa -3'
miRNA:   3'- aaGGCAA-----CGGGUU-GCCaguGUGCAGG- -5'
29943 3' -54.6 NC_006273.1 + 143993 0.7 0.890309
Target:  5'- cUUCCGUaaucUGCCCuuuACGGUgcUGCGUCUg -3'
miRNA:   3'- -AAGGCA----ACGGGu--UGCCAguGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.