Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29943 | 3' | -54.6 | NC_006273.1 | + | 214141 | 0.73 | 0.712572 |
Target: 5'- -cCCGUUGUCCAAaGG-CGCGcCGUCCg -3' miRNA: 3'- aaGGCAACGGGUUgCCaGUGU-GCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 62123 | 0.73 | 0.75103 |
Target: 5'- gUUCCGggGgCCAGCaGcCGCugGUCCg -3' miRNA: 3'- -AAGGCaaCgGGUUGcCaGUGugCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 147597 | 0.73 | 0.760415 |
Target: 5'- -gCCGcgGCUCAcgacGCGGUUugaGCACGUCCg -3' miRNA: 3'- aaGGCaaCGGGU----UGCCAG---UGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 190600 | 0.71 | 0.854631 |
Target: 5'- -gCCGgcGCCCAuCGGcCGCGCGaucUCCu -3' miRNA: 3'- aaGGCaaCGGGUuGCCaGUGUGC---AGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 218488 | 0.7 | 0.86952 |
Target: 5'- cUCCGUUGCguuCCAGCcuGGcCGCGCG-CCg -3' miRNA: 3'- aAGGCAACG---GGUUG--CCaGUGUGCaGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 128375 | 0.7 | 0.883592 |
Target: 5'- -aCCGUUuuuucGCCCAGuCGGau-CACGUCCa -3' miRNA: 3'- aaGGCAA-----CGGGUU-GCCaguGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 143993 | 0.7 | 0.890309 |
Target: 5'- cUUCCGUaaucUGCCCuuuACGGUgcUGCGUCUg -3' miRNA: 3'- -AAGGCA----ACGGGu--UGCCAguGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 19641 | 0.68 | 0.945124 |
Target: 5'- -gCUGUggGCCCAcuGCGGUCGCuucuuGCGUUa -3' miRNA: 3'- aaGGCAa-CGGGU--UGCCAGUG-----UGCAGg -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 29016 | 0.68 | 0.935987 |
Target: 5'- gUCC-UUGauuaCCGacaucGCGGUCGCGCGUCg -3' miRNA: 3'- aAGGcAACg---GGU-----UGCCAGUGUGCAGg -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 147819 | 0.68 | 0.935987 |
Target: 5'- -gCCG-UGCCgAgccGCGGcuUCACACGUUCg -3' miRNA: 3'- aaGGCaACGGgU---UGCC--AGUGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 148595 | 0.68 | 0.931076 |
Target: 5'- -cCCG-UGCCCGucuacGCGGUC-CACGgUCUg -3' miRNA: 3'- aaGGCaACGGGU-----UGCCAGuGUGC-AGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 105246 | 0.68 | 0.931076 |
Target: 5'- -cCCGagGaaaCGGgGGUCACGCGUCCu -3' miRNA: 3'- aaGGCaaCgg-GUUgCCAGUGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 29608 | 0.68 | 0.931076 |
Target: 5'- gUUCCGUU-CCCGGCGGg--UACGUCa -3' miRNA: 3'- -AAGGCAAcGGGUUGCCaguGUGCAGg -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 230290 | 0.69 | 0.903086 |
Target: 5'- uUUCCGUuuuacgUGCC--GCGGUCcuaGCACGUCa -3' miRNA: 3'- -AAGGCA------ACGGguUGCCAG---UGUGCAGg -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 92610 | 0.71 | 0.830862 |
Target: 5'- -gCUGUUGCucgCCAGCGG-CGCGCGUgCg -3' miRNA: 3'- aaGGCAACG---GGUUGCCaGUGUGCAgG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 212680 | 0.72 | 0.805534 |
Target: 5'- -gCCGgcGCCUGACGGUCcuuuguGCGCGcUCCc -3' miRNA: 3'- aaGGCaaCGGGUUGCCAG------UGUGC-AGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 68117 | 0.72 | 0.787881 |
Target: 5'- -cCCGUcaUGCCCGccaccgccACGGUCAcCACG-CCg -3' miRNA: 3'- aaGGCA--ACGGGU--------UGCCAGU-GUGCaGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 201977 | 0.73 | 0.712572 |
Target: 5'- -gCCGacGCCCGagGCGGU-GCGCGUCCa -3' miRNA: 3'- aaGGCaaCGGGU--UGCCAgUGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 45493 | 0.76 | 0.567173 |
Target: 5'- -aCCGUcgcagccgacggcgaUGCCCGGCGGUCcgcccgACGCGUCUc -3' miRNA: 3'- aaGGCA---------------ACGGGUUGCCAG------UGUGCAGG- -5' |
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29943 | 3' | -54.6 | NC_006273.1 | + | 79716 | 0.66 | 0.982153 |
Target: 5'- -gCCGUaGUCC-ACGGUggugCACACGUgCa -3' miRNA: 3'- aaGGCAaCGGGuUGCCA----GUGUGCAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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