miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 5' -53.6 NC_006273.1 + 42873 1.11 0.006384
Target:  5'- cGCGAAACCCGGACUGAAUGACCGGGAc -3'
miRNA:   3'- -CGCUUUGGGCCUGACUUACUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 129518 0.75 0.711964
Target:  5'- aGCGcGACCCGGA--GAAUGGCCGGc- -3'
miRNA:   3'- -CGCuUUGGGCCUgaCUUACUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 41416 0.73 0.812421
Target:  5'- uCGGAGCCCaGGGC-GAGuuaccguUGACCGGGGu -3'
miRNA:   3'- cGCUUUGGG-CCUGaCUU-------ACUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 104465 0.72 0.845986
Target:  5'- cGCGAGACCUGGugUu--UGACCagcaggGGGAa -3'
miRNA:   3'- -CGCUUUGGGCCugAcuuACUGG------CCCU- -5'
29943 5' -53.6 NC_006273.1 + 160556 0.72 0.845986
Target:  5'- cGCGGAGCCCGcGGCUGGuacGAgCGGuGGg -3'
miRNA:   3'- -CGCUUUGGGC-CUGACUua-CUgGCC-CU- -5'
29943 5' -53.6 NC_006273.1 + 140835 0.71 0.90826
Target:  5'- cCGGAGCCCGGGgaGGAgcgGGgUGGGGg -3'
miRNA:   3'- cGCUUUGGGCCUgaCUUa--CUgGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 89387 0.71 0.90826
Target:  5'- aGCcaccACCUGGACggGGggGACCGGGGg -3'
miRNA:   3'- -CGcuu-UGGGCCUGa-CUuaCUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 140752 0.7 0.912371
Target:  5'- cGCGGAcCCCGGgucccguccguuccGCggcGggUgGACCGGGAa -3'
miRNA:   3'- -CGCUUuGGGCC--------------UGa--CuuA-CUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 93656 0.69 0.956472
Target:  5'- aCGAAAa-CGGACUGGcgGAaCGGGAa -3'
miRNA:   3'- cGCUUUggGCCUGACUuaCUgGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 141155 0.69 0.960071
Target:  5'- cCGGAACCCugccgcGGACUGc---GCCGGGGg -3'
miRNA:   3'- cGCUUUGGG------CCUGACuuacUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 164270 0.68 0.963459
Target:  5'- gGCGAAACUgGuGCUGGcgGcGCCGGGu -3'
miRNA:   3'- -CGCUUUGGgCcUGACUuaC-UGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 1106 0.68 0.969624
Target:  5'- cGCGGGAUggCGGGCUGuugcGUG-CCGGGGa -3'
miRNA:   3'- -CGCUUUGg-GCCUGACu---UACuGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 193786 0.68 0.969624
Target:  5'- uGCGAAA-CCGGugUGGAa-GCCGaGGAg -3'
miRNA:   3'- -CGCUUUgGGCCugACUUacUGGC-CCU- -5'
29943 5' -53.6 NC_006273.1 + 41037 0.68 0.969624
Target:  5'- gGCGucgacuGCUCGGGCguc-UGACUGGGAg -3'
miRNA:   3'- -CGCuu----UGGGCCUGacuuACUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 41044 0.68 0.969624
Target:  5'- cGCGGGAUggCGGGCUGuugcGUG-CCGGGGa -3'
miRNA:   3'- -CGCUUUGg-GCCUGACu---UACuGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 205092 0.67 0.979006
Target:  5'- -gGAGACCCGGGCgggacguuauauagUGAG-GGCCGGc- -3'
miRNA:   3'- cgCUUUGGGCCUG--------------ACUUaCUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 140437 0.67 0.979225
Target:  5'- cGCGAGACCCGGAagccgucgcgguCgaccccgcucccGAAgcuccUGACCGGGc -3'
miRNA:   3'- -CGCUUUGGGCCU------------Ga-----------CUU-----ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 125773 0.67 0.981728
Target:  5'- uGCGAGGCCCagGGGUUGuguGUGGCCGcGAa -3'
miRNA:   3'- -CGCUUUGGG--CCUGACu--UACUGGCcCU- -5'
29943 5' -53.6 NC_006273.1 + 198645 0.67 0.981728
Target:  5'- cCGGAGCCCGGuCUGAGcuccGACgCaGGAu -3'
miRNA:   3'- cGCUUUGGGCCuGACUUa---CUG-GcCCU- -5'
29943 5' -53.6 NC_006273.1 + 151969 0.67 0.981728
Target:  5'- cGCGGAugucccGCUCGGGCgccgccgGGCCGGGu -3'
miRNA:   3'- -CGCUU------UGGGCCUGacuua--CUGGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.