miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 5' -53.6 NC_006273.1 + 129518 0.75 0.711964
Target:  5'- aGCGcGACCCGGA--GAAUGGCCGGc- -3'
miRNA:   3'- -CGCuUUGGGCCUgaCUUACUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 140437 0.67 0.979225
Target:  5'- cGCGAGACCCGGAagccgucgcgguCgaccccgcucccGAAgcuccUGACCGGGc -3'
miRNA:   3'- -CGCUUUGGGCCU------------Ga-----------CUU-----ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 140752 0.7 0.912371
Target:  5'- cGCGGAcCCCGGgucccguccguuccGCggcGggUgGACCGGGAa -3'
miRNA:   3'- -CGCUUuGGGCC--------------UGa--CuuA-CUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 140835 0.71 0.90826
Target:  5'- cCGGAGCCCGGGgaGGAgcgGGgUGGGGg -3'
miRNA:   3'- cGCUUUGGGCCUgaCUUa--CUgGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 141155 0.69 0.960071
Target:  5'- cCGGAACCCugccgcGGACUGc---GCCGGGGg -3'
miRNA:   3'- cGCUUUGGG------CCUGACuuacUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 151969 0.67 0.981728
Target:  5'- cGCGGAugucccGCUCGGGCgccgccgGGCCGGGu -3'
miRNA:   3'- -CGCUU------UGGGCCUGacuua--CUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 160556 0.72 0.845986
Target:  5'- cGCGGAGCCCGcGGCUGGuacGAgCGGuGGg -3'
miRNA:   3'- -CGCUUUGGGC-CUGACUua-CUgGCC-CU- -5'
29943 5' -53.6 NC_006273.1 + 164270 0.68 0.963459
Target:  5'- gGCGAAACUgGuGCUGGcgGcGCCGGGu -3'
miRNA:   3'- -CGCUUUGGgCcUGACUuaC-UGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 185426 0.66 0.991003
Target:  5'- uGCGgcACCCGG-CUGcacGUGGCCuGGc -3'
miRNA:   3'- -CGCuuUGGGCCuGACu--UACUGGcCCu -5'
29943 5' -53.6 NC_006273.1 + 193786 0.68 0.969624
Target:  5'- uGCGAAA-CCGGugUGGAa-GCCGaGGAg -3'
miRNA:   3'- -CGCUUUgGGCCugACUUacUGGC-CCU- -5'
29943 5' -53.6 NC_006273.1 + 194999 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 195044 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 198645 0.67 0.981728
Target:  5'- cCGGAGCCCGGuCUGAGcuccGACgCaGGAu -3'
miRNA:   3'- cGCUUUGGGCCuGACUUa---CUG-GcCCU- -5'
29943 5' -53.6 NC_006273.1 + 205092 0.67 0.979006
Target:  5'- -gGAGACCCGGGCgggacguuauauagUGAG-GGCCGGc- -3'
miRNA:   3'- cgCUUUGGGCCUG--------------ACUUaCUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 213408 0.66 0.988458
Target:  5'- gGCGuAGCgaGGGCUGAAaacucuCCGGGAa -3'
miRNA:   3'- -CGCuUUGggCCUGACUUacu---GGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 225711 0.66 0.988458
Target:  5'- cCGAAACCCaggcgcaauGGAgUGAGaGGCCGGa- -3'
miRNA:   3'- cGCUUUGGG---------CCUgACUUaCUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 234937 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 234982 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.