miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29943 5' -53.6 NC_006273.1 + 129518 0.75 0.711964
Target:  5'- aGCGcGACCCGGA--GAAUGGCCGGc- -3'
miRNA:   3'- -CGCuUUGGGCCUgaCUUACUGGCCcu -5'
29943 5' -53.6 NC_006273.1 + 51539 0.66 0.992097
Target:  5'- -gGAGGCCgGGACgacaGAG-GACgGGGGg -3'
miRNA:   3'- cgCUUUGGgCCUGa---CUUaCUGgCCCU- -5'
29943 5' -53.6 NC_006273.1 + 195044 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 194999 0.66 0.991887
Target:  5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3'
miRNA:   3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 21341 0.66 0.990652
Target:  5'- aGCGGAACCCGGGCUcaccGcAGUugcugccuuacggcGACCGucuGGAg -3'
miRNA:   3'- -CGCUUUGGGCCUGA----C-UUA--------------CUGGC---CCU- -5'
29943 5' -53.6 NC_006273.1 + 68800 0.66 0.988458
Target:  5'- aGCGAcuggAACCCGGACgc-GUaGCCGGcGGc -3'
miRNA:   3'- -CGCU----UUGGGCCUGacuUAcUGGCC-CU- -5'
29943 5' -53.6 NC_006273.1 + 213408 0.66 0.988458
Target:  5'- gGCGuAGCgaGGGCUGAAaacucuCCGGGAa -3'
miRNA:   3'- -CGCuUUGggCCUGACUUacu---GGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 82833 0.67 0.985387
Target:  5'- gGCGAGuuCCCGGcgaUGAAgaucuugaGGCUGGGAa -3'
miRNA:   3'- -CGCUUu-GGGCCug-ACUUa-------CUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 8511 0.67 0.983635
Target:  5'- aGgGAGAUCaugucaugggCGGGCUGAAgaccGugCGGGAa -3'
miRNA:   3'- -CgCUUUGG----------GCCUGACUUa---CugGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 198645 0.67 0.981728
Target:  5'- cCGGAGCCCGGuCUGAGcuccGACgCaGGAu -3'
miRNA:   3'- cGCUUUGGGCCuGACUUa---CUG-GcCCU- -5'
29943 5' -53.6 NC_006273.1 + 151969 0.67 0.981728
Target:  5'- cGCGGAugucccGCUCGGGCgccgccgGGCCGGGu -3'
miRNA:   3'- -CGCUU------UGGGCCUGacuua--CUGGCCCu -5'
29943 5' -53.6 NC_006273.1 + 41416 0.73 0.812421
Target:  5'- uCGGAGCCCaGGGC-GAGuuaccguUGACCGGGGu -3'
miRNA:   3'- cGCUUUGGG-CCUGaCUU-------ACUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 104465 0.72 0.845986
Target:  5'- cGCGAGACCUGGugUu--UGACCagcaggGGGAa -3'
miRNA:   3'- -CGCUUUGGGCCugAcuuACUGG------CCCU- -5'
29943 5' -53.6 NC_006273.1 + 93656 0.69 0.956472
Target:  5'- aCGAAAa-CGGACUGGcgGAaCGGGAa -3'
miRNA:   3'- cGCUUUggGCCUGACUuaCUgGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 41037 0.68 0.969624
Target:  5'- gGCGucgacuGCUCGGGCguc-UGACUGGGAg -3'
miRNA:   3'- -CGCuu----UGGGCCUGacuuACUGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 193786 0.68 0.969624
Target:  5'- uGCGAAA-CCGGugUGGAa-GCCGaGGAg -3'
miRNA:   3'- -CGCUUUgGGCCugACUUacUGGC-CCU- -5'
29943 5' -53.6 NC_006273.1 + 1106 0.68 0.969624
Target:  5'- cGCGGGAUggCGGGCUGuugcGUG-CCGGGGa -3'
miRNA:   3'- -CGCUUUGg-GCCUGACu---UACuGGCCCU- -5'
29943 5' -53.6 NC_006273.1 + 125773 0.67 0.981728
Target:  5'- uGCGAGGCCCagGGGUUGuguGUGGCCGcGAa -3'
miRNA:   3'- -CGCUUUGGG--CCUGACu--UACUGGCcCU- -5'
29943 5' -53.6 NC_006273.1 + 122715 0.66 0.993084
Target:  5'- cGCGAAAaUCGGugUGAAagcgGAUaaaGGGAu -3'
miRNA:   3'- -CGCUUUgGGCCugACUUa---CUGg--CCCU- -5'
29943 5' -53.6 NC_006273.1 + 160556 0.72 0.845986
Target:  5'- cGCGGAGCCCGcGGCUGGuacGAgCGGuGGg -3'
miRNA:   3'- -CGCUUUGGGC-CUGACUua-CUgGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.