Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29943 | 5' | -53.6 | NC_006273.1 | + | 140835 | 0.71 | 0.90826 |
Target: 5'- cCGGAGCCCGGGgaGGAgcgGGgUGGGGg -3' miRNA: 3'- cGCUUUGGGCCUgaCUUa--CUgGCCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 151 | 0.66 | 0.991887 |
Target: 5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3' miRNA: 3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 234937 | 0.66 | 0.991887 |
Target: 5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3' miRNA: 3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 122715 | 0.66 | 0.993084 |
Target: 5'- cGCGAAAaUCGGugUGAAagcgGAUaaaGGGAu -3' miRNA: 3'- -CGCUUUgGGCCugACUUa---CUGg--CCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 41044 | 0.68 | 0.969624 |
Target: 5'- cGCGGGAUggCGGGCUGuugcGUG-CCGGGGa -3' miRNA: 3'- -CGCUUUGg-GCCUGACu---UACuGGCCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 205092 | 0.67 | 0.979006 |
Target: 5'- -gGAGACCCGGGCgggacguuauauagUGAG-GGCCGGc- -3' miRNA: 3'- cgCUUUGGGCCUG--------------ACUUaCUGGCCcu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 8236 | 0.66 | 0.988458 |
Target: 5'- gGUGggGCCgGGACgGggUGggacgagaGCCGGu- -3' miRNA: 3'- -CGCuuUGGgCCUGaCuuAC--------UGGCCcu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 42873 | 1.11 | 0.006384 |
Target: 5'- cGCGAAACCCGGACUGAAUGACCGGGAc -3' miRNA: 3'- -CGCUUUGGGCCUGACUUACUGGCCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 160556 | 0.72 | 0.845986 |
Target: 5'- cGCGGAGCCCGcGGCUGGuacGAgCGGuGGg -3' miRNA: 3'- -CGCUUUGGGC-CUGACUua-CUgGCC-CU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 116441 | 0.66 | 0.991003 |
Target: 5'- cCGGAcuguCCCGGgcACUGAuccUGACCGGa- -3' miRNA: 3'- cGCUUu---GGGCC--UGACUu--ACUGGCCcu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 90271 | 0.66 | 0.989792 |
Target: 5'- gGCGAAucGCCCGGGCUGccccgcagguGGUGAUCa--- -3' miRNA: 3'- -CGCUU--UGGGCCUGAC----------UUACUGGcccu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 140752 | 0.7 | 0.912371 |
Target: 5'- cGCGGAcCCCGGgucccguccguuccGCggcGggUgGACCGGGAa -3' miRNA: 3'- -CGCUUuGGGCC--------------UGa--CuuA-CUGGCCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 185426 | 0.66 | 0.991003 |
Target: 5'- uGCGgcACCCGG-CUGcacGUGGCCuGGc -3' miRNA: 3'- -CGCuuUGGGCCuGACu--UACUGGcCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 141155 | 0.69 | 0.960071 |
Target: 5'- cCGGAACCCugccgcGGACUGc---GCCGGGGg -3' miRNA: 3'- cGCUUUGGG------CCUGACuuacUGGCCCU- -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 225711 | 0.66 | 0.988458 |
Target: 5'- cCGAAACCCaggcgcaauGGAgUGAGaGGCCGGa- -3' miRNA: 3'- cGCUUUGGG---------CCUgACUUaCUGGCCcu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 106 | 0.66 | 0.991887 |
Target: 5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3' miRNA: 3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 234982 | 0.66 | 0.991887 |
Target: 5'- gGCGuguGCCgGGugUGucgggguguguUGGCCGGGu -3' miRNA: 3'- -CGCuu-UGGgCCugACuu---------ACUGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 164270 | 0.68 | 0.963459 |
Target: 5'- gGCGAAACUgGuGCUGGcgGcGCCGGGu -3' miRNA: 3'- -CGCUUUGGgCcUGACUuaC-UGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 140437 | 0.67 | 0.979225 |
Target: 5'- cGCGAGACCCGGAagccgucgcgguCgaccccgcucccGAAgcuccUGACCGGGc -3' miRNA: 3'- -CGCUUUGGGCCU------------Ga-----------CUU-----ACUGGCCCu -5' |
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29943 | 5' | -53.6 | NC_006273.1 | + | 89387 | 0.71 | 0.90826 |
Target: 5'- aGCcaccACCUGGACggGGggGACCGGGGg -3' miRNA: 3'- -CGcuu-UGGGCCUGa-CUuaCUGGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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