miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 196158 0.66 0.931978
Target:  5'- -uGGUCGCAgcGCGACG-CGGGC-ACg -3'
miRNA:   3'- gcUCGGCGUauCGCUGCcGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 116359 0.66 0.931978
Target:  5'- uGAG-CGgGUAGCGACGGUGAcg-ACa -3'
miRNA:   3'- gCUCgGCgUAUCGCUGCCGCUcgaUG- -5'
29944 3' -57.3 NC_006273.1 + 160129 0.66 0.931978
Target:  5'- -cGGCCGCc--GCGGCGGCcAGCg-- -3'
miRNA:   3'- gcUCGGCGuauCGCUGCCGcUCGaug -5'
29944 3' -57.3 NC_006273.1 + 139540 0.66 0.931978
Target:  5'- cCGAaucuCCGCGcaacaugaUGGCGGCGGCGGuGgUGCg -3'
miRNA:   3'- -GCUc---GGCGU--------AUCGCUGCCGCU-CgAUG- -5'
29944 3' -57.3 NC_006273.1 + 113528 0.66 0.931978
Target:  5'- gGGGgCGCGcgGGCGGCGaagagaaGGGCUACg -3'
miRNA:   3'- gCUCgGCGUa-UCGCUGCcg-----CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 1265 0.66 0.931978
Target:  5'- -uGGUCGCAgcGCGACG-CGGGC-ACg -3'
miRNA:   3'- gcUCGGCGUauCGCUGCcGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 192117 0.66 0.931485
Target:  5'- gGAGCgGC--AGCGGCuagacaagucccaGGCG-GCUACa -3'
miRNA:   3'- gCUCGgCGuaUCGCUG-------------CCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 199422 0.66 0.930492
Target:  5'- cCGaAGCCGCGcgAGCGuGCGaGCGGgguucaccugcagcGCUACg -3'
miRNA:   3'- -GC-UCGGCGUa-UCGC-UGC-CGCU--------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 95260 0.66 0.926949
Target:  5'- -uGGCCGau--GCGGCGGCGAGg--- -3'
miRNA:   3'- gcUCGGCguauCGCUGCCGCUCgaug -5'
29944 3' -57.3 NC_006273.1 + 124437 0.66 0.926949
Target:  5'- -cGGCCGCGcgGGCGugcGCGGCucgccGAcGCUGCg -3'
miRNA:   3'- gcUCGGCGUa-UCGC---UGCCG-----CU-CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 72577 0.66 0.926949
Target:  5'- cCGcAGCUGC--GGCGACcGCG-GCUGCc -3'
miRNA:   3'- -GC-UCGGCGuaUCGCUGcCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 30686 0.66 0.921696
Target:  5'- -cGGCCGC--GGUGcCGGCG-GCUAUg -3'
miRNA:   3'- gcUCGGCGuaUCGCuGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 154065 0.66 0.921696
Target:  5'- -aGGCUGCGUgaggucauugccAGCGugGGCGAaCUAg -3'
miRNA:   3'- gcUCGGCGUA------------UCGCugCCGCUcGAUg -5'
29944 3' -57.3 NC_006273.1 + 121636 0.66 0.921696
Target:  5'- uGAGCUGCAUgAGC-ACGGCGccGCcGCc -3'
miRNA:   3'- gCUCGGCGUA-UCGcUGCCGCu-CGaUG- -5'
29944 3' -57.3 NC_006273.1 + 196391 0.66 0.921696
Target:  5'- aGAGCCcGCccuUGGUGAUGaGCG-GUUGCa -3'
miRNA:   3'- gCUCGG-CGu--AUCGCUGC-CGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 70924 0.66 0.920619
Target:  5'- uCGGGuuGCcuggacgccugGGCGcgacGCGGCGuGCUGCu -3'
miRNA:   3'- -GCUCggCGua---------UCGC----UGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 31452 0.66 0.91622
Target:  5'- gCGaAGCCGCcaugaGGCGGUG-GCUGCg -3'
miRNA:   3'- -GC-UCGGCGuaucgCUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 202639 0.66 0.91622
Target:  5'- --uGCCGCAguugcuggAGCG-CGGCcuGCUACa -3'
miRNA:   3'- gcuCGGCGUa-------UCGCuGCCGcuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 58354 0.66 0.91622
Target:  5'- -cAGCgCGCGcUGGCGAUGGaGAGCcGCg -3'
miRNA:   3'- gcUCG-GCGU-AUCGCUGCCgCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 98199 0.66 0.91622
Target:  5'- aCGAGCuCGCugAGCGGCaGCG-GCgGCa -3'
miRNA:   3'- -GCUCG-GCGuaUCGCUGcCGCuCGaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.