miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 113528 0.66 0.931978
Target:  5'- gGGGgCGCGcgGGCGGCGaagagaaGGGCUACg -3'
miRNA:   3'- gCUCgGCGUa-UCGCUGCcg-----CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 30686 0.66 0.921696
Target:  5'- -cGGCCGC--GGUGcCGGCG-GCUAUg -3'
miRNA:   3'- gcUCGGCGuaUCGCuGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 98199 0.66 0.91622
Target:  5'- aCGAGCuCGCugAGCGGCaGCG-GCgGCa -3'
miRNA:   3'- -GCUCG-GCGuaUCGCUGcCGCuCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 192117 0.66 0.931485
Target:  5'- gGAGCgGC--AGCGGCuagacaagucccaGGCG-GCUACa -3'
miRNA:   3'- gCUCGgCGuaUCGCUG-------------CCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 105168 0.66 0.910522
Target:  5'- gCGGcGCCGCggccucgcccagGUAGCcggaGACGGCG-GUUACg -3'
miRNA:   3'- -GCU-CGGCG------------UAUCG----CUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 139540 0.66 0.931978
Target:  5'- cCGAaucuCCGCGcaacaugaUGGCGGCGGCGGuGgUGCg -3'
miRNA:   3'- -GCUc---GGCGU--------AUCGCUGCCGCU-CgAUG- -5'
29944 3' -57.3 NC_006273.1 + 140717 0.67 0.878768
Target:  5'- gGAGUgGU--GGCGGCGGCgGGGCcgGCg -3'
miRNA:   3'- gCUCGgCGuaUCGCUGCCG-CUCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 54946 0.67 0.904603
Target:  5'- -cAGUCGgGUGGUGGCGGCGguGGCg-- -3'
miRNA:   3'- gcUCGGCgUAUCGCUGCCGC--UCGaug -5'
29944 3' -57.3 NC_006273.1 + 57695 0.67 0.871786
Target:  5'- -cAGCCGCAgcgccAGCGuCGGCG-GCUcCg -3'
miRNA:   3'- gcUCGGCGUa----UCGCuGCCGCuCGAuG- -5'
29944 3' -57.3 NC_006273.1 + 80955 0.67 0.871786
Target:  5'- gCGAGUCGCccAGCGGguCGGCcAGCUcGCa -3'
miRNA:   3'- -GCUCGGCGuaUCGCU--GCCGcUCGA-UG- -5'
29944 3' -57.3 NC_006273.1 + 147961 0.67 0.878768
Target:  5'- aGAGCaGCGUAGCGccguguugGCGcGCGuGUUGCu -3'
miRNA:   3'- gCUCGgCGUAUCGC--------UGC-CGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 233297 0.67 0.885545
Target:  5'- cCGAGCCGUAgcauguggguGCGAUgcgguggauguGGUGGGCUGg -3'
miRNA:   3'- -GCUCGGCGUau--------CGCUG-----------CCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 1839 0.67 0.881504
Target:  5'- aCGAGCCGUuc-GCGuCGGCGccgcaccccgcgucGCUGCu -3'
miRNA:   3'- -GCUCGGCGuauCGCuGCCGCu-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 100395 0.67 0.885545
Target:  5'- aCGAGUU-CAUGGCGGCuguGGCGGGUcGCg -3'
miRNA:   3'- -GCUCGGcGUAUCGCUG---CCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 68782 0.67 0.878768
Target:  5'- -aAGCgGCGgcGGCGAUGGCGGGgCUGg -3'
miRNA:   3'- gcUCGgCGUa-UCGCUGCCGCUC-GAUg -5'
29944 3' -57.3 NC_006273.1 + 188650 0.67 0.890164
Target:  5'- aGcAGCCGCGUcuuaAGCGgcuccgaguacagcACGuCGAGCUGCg -3'
miRNA:   3'- gC-UCGGCGUA----UCGC--------------UGCcGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 189037 0.67 0.878768
Target:  5'- aCGAcaGCCGCGUGGUGGgggcccggacCGGCG-GCguagGCg -3'
miRNA:   3'- -GCU--CGGCGUAUCGCU----------GCCGCuCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 196731 0.67 0.881504
Target:  5'- aCGAGCCGUuc-GCGuCGGCGccgcaccccgcgucGCUGCu -3'
miRNA:   3'- -GCUCGGCGuauCGCuGCCGCu-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 213109 0.67 0.885545
Target:  5'- --uGCCGCAgaugAGCgcaccGACGGCgGAGCcGCg -3'
miRNA:   3'- gcuCGGCGUa---UCG-----CUGCCG-CUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 145185 0.67 0.892112
Target:  5'- uGGGCCGCAgcauuUGGCGuuGGUGuGUgGCa -3'
miRNA:   3'- gCUCGGCGU-----AUCGCugCCGCuCGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.